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11  structures 230  species 1  interaction 349  sequences 8  architectures

Family: Alpha_adaptin_C (PF02296)

Summary: Alpha adaptin AP2, C-terminal domain

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This is the Wikipedia entry entitled "B2-adapt-app C". More...

B2-adapt-app C Edit Wikipedia article

B2-adapt-app_C
PDB 1e42 EBI.jpg
beta2-adaptin appendage domain, from clathrin adaptor ap2
Identifiers
Symbol B2-adapt-app_C
Pfam PF09066
InterPro IPR015151
SCOP 1e42
SUPERFAMILY 1e42

In molecular biology, this domain, beta2-adaptin is involved in helping cell trafficking by aiding import and export of substances in and out of the cell. This entry refers in particular to the C terminal domain.

Function[edit]

This is an adaptor protein which helps the formation of a clathrin coat around a vesicle.

Structure[edit]

This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet.[1] This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15).[2]

Cell trafficking[edit]

Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport.[3] Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors.[4][5]

AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes.[6] AP2 associates with the plasma membrane and is responsible for endocytosis.[7] AP3 is responsible for protein trafficking to lysosomes and other related organelles.[8] AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins.[9] One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface .[10]

More information about these proteins can be found at Protein of the Month: Clathrin .

References[edit]

  1. ^ Traub LM, Downs MA, Westrich JL, Fremont DH (August 1999). "Crystal structure of the alpha appendage of AP-2 reveals a recruitment platform for clathrin-coat assembly". Proc. Natl. Acad. Sci. U.S.A. 96 (16): 8907–€“12. doi:10.1073/pnas.96.16.8907. PMC 17706. PMID 10430869. 
  2. ^ Owen DJ, Vallis Y, Pearse BM, McMahon HT, Evans PR (August 2000). "The structure and function of the beta 2-adaptin appendage domain". EMBO J. 19 (16): 4216–27. doi:10.1093/emboj/19.16.4216. PMC 302036. PMID 10944104. 
  3. ^ McMahon HT, Mills IG (August 2004). "COP and clathrin-coated vesicle budding: different pathways, common approaches". Curr. Opin. Cell Biol. 16 (4): 379–91. doi:10.1016/j.ceb.2004.06.009. PMID 15261670. 
  4. ^ Voglmaier SM, Edwards RH (June 2007). "Do different endocytic pathways make different synaptic vesicles?". Curr. Opin. Neurobiol. 17 (3): 374–80. doi:10.1016/j.conb.2007.04.002. PMID 17449236. 
  5. ^ Boehm M, Bonifacino JS (October 2001). "Adaptins: the final recount". Mol. Biol. Cell 12 (10): 2907–20. PMC 60144. PMID 11598180. 
  6. ^ Touz MC, Kulakova L, Nash TE (July 2004). "Adaptor protein complex 1 mediates the transport of lysosomal proteins from a Golgi-like organelle to peripheral vacuoles in the primitive eukaryote Giardia lamblia". Mol. Biol. Cell 15 (7): 3053–60. doi:10.1091/mbc.E03-10-0744. PMC 452563. PMID 15107467. 
  7. ^ Conner SD, Schmid SL (September 2003). "Differential requirements for AP-2 in clathrin-mediated endocytosis". J. Cell Biol. 162 (5): 773–9. doi:10.1083/jcb.200304069. PMC 2172816. PMID 12952931. 
  8. ^ Gupta SN, Kloster MM, Rodionov DG, Bakke O (June 2006). "Re-routing of the invariant chain to the direct sorting pathway by introduction of an AP3-binding motif from LIMP II". Eur. J. Cell Biol. 85 (6): 457–67. doi:10.1016/j.ejcb.2006.02.001. PMID 16542748. 
  9. ^ Haucke V, Wenk MR, Chapman ER, Farsad K, De Camilli P (November 2000). "Dual interaction of synaptotagmin with mu2- and alpha-adaptin facilitates clathrin-coated pit nucleation". EMBO J. 19 (22): 6011–9. doi:10.1093/emboj/19.22.6011. PMC 305843. PMID 11080148. 
  10. ^ Kanematsu T, Fujii M, Mizokami A, Kittler JT, Nabekura J, Moss SJ, Hirata M (May 2007). "Phospholipase C-related inactive protein is implicated in the constitutive internalization of GABAA receptors mediated by clathrin and AP2 adaptor complex". J. Neurochem. 101 (4): 898–905. doi:10.1111/j.1471-4159.2006.04399.x. PMID 17254016. 

This article incorporates text from the public domain Pfam and InterPro IPR015151

This page is based on a Wikipedia article. The text is available under the Creative Commons Attribution/Share-Alike License.

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Alpha adaptin AP2, C-terminal domain Provide feedback

Alpha adaptin is a hetero tetramer which regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site.

Literature references

  1. Traub LM, Downs MA, Westrich JL, Fremont DH; , Proc Natl Acad Sci U S A 1999;96:8907-8912.: Crystal structure of the alpha appendage of AP-2 reveals a recruitment platform for clathrin-coat assembly PUBMED:10430869 EPMC:10430869


Internal database links

External database links

This tab holds annotation information from the InterPro database.

InterPro entry IPR003164

Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport [PUBMED:15261670]. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [PUBMED:17449236, PUBMED:11598180].

AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes [PUBMED:15107467]. AP2 associates with the plasma membrane and is responsible for endocytosis [PUBMED:12952931]. AP3 is responsible for protein trafficking to lysosomes and other related organelles [PUBMED:16542748]. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins [PUBMED:11080148]. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface [PUBMED:17254016].

AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site [PUBMED:12057195].

This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet [PUBMED:10430869].

More information about these proteins can be found at Protein of the Month: Clathrin [PUBMED:].

Gene Ontology

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Domain organisation

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Representative proteomes NCBI
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  Seed
(21)
Full
(349)
Representative proteomes NCBI
(333)
Meta
(4)
RP15
(80)
RP35
(124)
RP55
(184)
RP75
(231)
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  Seed
(21)
Full
(349)
Representative proteomes NCBI
(333)
Meta
(4)
RP15
(80)
RP35
(124)
RP55
(184)
RP75
(231)
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Curation and family details

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Curation View help on the curation process

Seed source: Pfam-B_8859 (release 5.2)
Previous IDs: none
Type: Family
Author: Mian N, Bateman A, Griffiths-Jones SR
Number in seed: 21
Number in full: 349
Average length of the domain: 109.80 aa
Average identity of full alignment: 43 %
Average coverage of the sequence by the domain: 12.10 %

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HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 24.2 24.2
Trusted cut-off 24.3 24.2
Noise cut-off 24.0 24.0
Model length: 113
Family (HMM) version: 11
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Interactions

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Alpha_adaptinC2

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the Alpha_adaptin_C domain has been found. There are 11 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.

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