Summary: Galactose-1-phosphate uridyl transferase, C-terminal domain
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Galactose-1-phosphate uridylyltransferase Edit Wikipedia article
| GALT | |||||||||||||||||
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| Aliases | GALT, entrez:2592, galactose-1-phosphate uridylyltransferase | ||||||||||||||||
| External IDs | OMIM: 606999 MGI: 95638 HomoloGene: 126 GeneCards: GALT | ||||||||||||||||
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| Species | Human | Mouse | |||||||||||||||
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| Location (UCSC) | Chr 9: 34.64 – 34.65 Mb | Chr 4: 41.76 – 41.76 Mb | |||||||||||||||
| PubMed search | [1] | [2] | |||||||||||||||
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| Galactose-1-phosphate uridyl transferase, N-terminal domain | |||||||||
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| Symbol | GalP_UDP_transf | ||||||||
| Pfam | PF01087 | ||||||||
| Pfam clan | CL0265 | ||||||||
| PROSITE | PDOC00108 | ||||||||
| SCOP | 1hxp | ||||||||
| SUPERFAMILY | 1hxp | ||||||||
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| Galactose-1-phosphate uridyl transferase, C-terminal domain | |||||||||
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structure of nucleotidyltransferase complexed with udp-galactose
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| Identifiers | |||||||||
| Symbol | GalP_UDP_tr_C | ||||||||
| Pfam | PF02744 | ||||||||
| Pfam clan | CL0265 | ||||||||
| InterPro | IPR005850 | ||||||||
| PROSITE | PDOC00108 | ||||||||
| SCOP | 1hxp | ||||||||
| SUPERFAMILY | 1hxp | ||||||||
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Galactose-1-phosphate uridylyltransferase (or GALT) is an enzyme (EC 2.7.7.12) responsible for converting ingested galactose to glucose.[3]
Galactose-1-phosphate uridylyltransferase (GALT) catalyzes the second step of the Leloir pathway of galactose metabolism, namely:
The expression of GALT is controlled by the actions of the FOXO3 gene. The absence of this enzyme results in classic galactosemia in humans and can be fatal in the newborn period if lactose is not removed from the diet. The pathophysiology of galactosemia has not been clearly defined.[3]
Contents
Mechanism
GALT catalyzes the second reaction of the Leloir pathway of galactose metabolism through ping pong bi-bi kinetics with a double displacement mechanism.[4] This means that the net reaction consists of two reactants and two products (see the reaction above) and it proceeds by the following mechanism: the enzyme reacts with one substrate to generate one product and a modified enzyme, which goes on to react with the second substrate to make the second product while regenerating the original enzyme.[5] In the case of GALT, the His166 residue acts as a potent nucleophile to facilitate transfer of a nucleotide between UDP-hexoses and hexose-1-phosphates.[6]
- UDP-glucose + E-His ⇌ Glucose-1-phosphate + E-His-UMP
- Galactose-1-phosphate + E-His-UMP ⇌ UDP-galactose + E-His[6]
Structural studies
The three-dimensional structure at 180 pm resolution (x-ray crystallography) of GALT was determined by Wedekind, Frey, and Rayment, and their structural analysis found key amino acids essential for GALT function.[6] Among these are Leu4, Phe75, Asn77, Asp78, Phe79, and Val108, which are consistent with residues that have been implicated both in point mutation experiments as well as in clinical screening that play a role in human galactosemia.[6][8]
Clinical significance
Deficiency of GALT causes classic galactosemia. Galactosemia is an autosomal recessive inherited disorder detectable in newborns and childhood.[9] It occurs at approximately 1 in every 40,000-60,000 live-born infants. Classical galactosemia (G/G) is caused by a deficiency in GALT activity, whereas the more common clinical manifestations, Duarte (D/D) and the Duarte/Classical variant (D/G) are caused by the attenuation of GALT activity.[10] Symptoms include ovarian failure, developmental coordination disorder (difficulty speaking correctly and consistently),[11] and neurologic deficits.[10] A single mutation in any of several base pairs can lead to deficiency in GALT activity.[12] For example, a single mutation from A to G in exon 6 of the GALT gene changes Glu188 to an arginine and a mutation from A to G in exon 10 converts Asn314 to an aspartic acid.[10] These two mutations also add new restriction enzyme cut sites, which enable detection by and large-scale population screening with PCR (polymerase chain reaction).[10] Screening has mostly eliminated neonatal death by G/G galactosemia, but the disease, due to GALT’s role in the biochemical metabolism of ingested galactose (which is toxic when accumulated) to the energetically useful glucose, can certainly be fatal.[9][13] However, those afflicted with galactosemia can live relatively normal lives by avoiding milk products and anything else containing galactose (because it cannot be metabolized), but there is still the potential for problems in neurological development or other complications, even in those who avoid galactose.[14]
Disease database
Galactosemia (GALT) Mutation Database
References
- ^ "Human PubMed Reference:".
- ^ "Mouse PubMed Reference:".
- ^ a b "Entrez Gene: GALT galactose-1-phosphate uridylyltransferase".
- ^ Wong LJ, Frey PA (September 1974). "Galactose-1-phosphate uridylyltransferase: rate studies confirming a uridylyl-enzyme intermediate on the catalytic pathway". Biochemistry. 13 (19): 3889–3894. PMID 4606575. doi:10.1021/bi00716a011.
- ^ http://www.mondofacto.com/facts/dictionary?double+displacement+mechanism
- ^ a b c d Wedekind JE, Frey PA, Rayment I (September 1995). "Three-dimensional structure of galactose-1-phosphate uridylyltransferase from Escherichia coli at 1.8 A resolution". Biochemistry. 34 (35): 11049–61. PMID 7669762. doi:10.1021/bi00035a010.
- ^ http://web.virginia.edu/Heidi/chapter19/chp19frameset.htm
- ^ Seyrantepe V, Ozguc M, Coskun T, Ozalp I, Reichardt JK (1999). "Identification of mutations in the galactose-1-phosphate uridyltransferase (GALT) gene in 16 Turkish patients with galactosemia, including a novel mutation of F294Y. Mutation in brief no. 235. Online". Hum. Mutat. 13 (4): 339. PMID 10220154. doi:10.1002/(SICI)1098-1004(1999)13:4<339::AID-HUMU18>3.0.CO;2-S.
- ^ a b Fridovich-Keil JL (December 2006). "Galactosemia: the good, the bad, and the unknown". J. Cell. Physiol. 209 (3): 701–5. PMID 17001680. doi:10.1002/jcp.20820.
- ^ a b c d Elsas LJ, Langley S, Paulk EM, Hjelm LN, Dembure PP (1995). "A molecular approach to galactosemia". Eur. J. Pediatr. 154 (7 Suppl 2): S21–7. PMID 7671959. doi:10.1007/BF02143798.
- ^ http://www.nidcd.nih.gov/health/voice/apraxia.htm
- ^ Dobrowolski SF, Banas RA, Suzow JG, Berkley M, Naylor EW (February 2003). "Analysis of common mutations in the galactose-1-phosphate uridyl transferase gene: new assays to increase the sensitivity and specificity of newborn screening for galactosemia". J Mol Diagn. 5 (1): 42–7. PMC 1907369
. PMID 12552079. doi:10.1016/S1525-1578(10)60450-3. - ^ Lai K, Elsas LJ, Wierenga KJ (November 2009). "Galactose toxicity in animals". IUBMB Life. 61 (11): 1063–74. PMC 2788023 . PMID 19859980. doi:10.1002/iub.262.
- ^ http://www.umm.edu/ency/article/000366trt.htm
Further reading
- Reichardt JK (1993). "Genetic basis of galactosemia". Hum. Mutat. 1 (3): 190–6. PMID 1301925. doi:10.1002/humu.1380010303.
- Tyfield L, Reichardt J, Fridovich-Keil J, et al. (1999). "Classical galactosemia and mutations at the galactose-1-phosphate uridyl transferase (GALT) gene". Hum. Mutat. 13 (6): 417–30. PMID 10408771. doi:10.1002/(SICI)1098-1004(1999)13:6<417::AID-HUMU1>3.0.CO;2-0.
- Reichardt JK, Belmont JW, Levy HL, Woo SL (1992). "Characterization of two missense mutations in human galactose-1-phosphate uridyltransferase: different molecular mechanisms for galactosemia". Genomics. 12 (3): 596–600. PMID 1373122. doi:10.1016/0888-7543(92)90453-Y.
- Leslie ND, Immerman EB, Flach JE, et al. (1992). "The human galactose-1-phosphate uridyltransferase gene". Genomics. 14 (2): 474–80. PMID 1427861. doi:10.1016/S0888-7543(05)80244-7.
- Reichardt JK, Levy HL, Woo SL (1992). "Molecular characterization of two galactosemia mutations and one polymorphism: implications for structure-function analysis of human galactose-1-phosphate uridyltransferase". Biochemistry. 31 (24): 5430–3. PMID 1610789. doi:10.1021/bi00139a002.
- Reichardt JK, Packman S, Woo SL (1991). "Molecular characterization of two galactosemia mutations: correlation of mutations with highly conserved domains in galactose-1-phosphate uridyl transferase". Am. J. Hum. Genet. 49 (4): 860–7. PMC 1683190 . PMID 1897530.
- Reichardt JK, Woo SL (1991). "Molecular basis of galactosemia: mutations and polymorphisms in the gene encoding human galactose-1-phosphate uridylyltransferase". Proc. Natl. Acad. Sci. U.S.A. 88 (7): 2633–7. PMC 51292 . PMID 2011574. doi:10.1073/pnas.88.7.2633.
- Flach JE, Reichardt JK, Elsas LJ (1990). "Sequence of a cDNA encoding human galactose-1-phosphate uridyl transferase". Mol. Biol. Med. 7 (4): 365–9. PMID 2233247.
- Reichardt JK, Berg P (1988). "Cloning and characterization of a cDNA encoding human galactose-1-phosphate uridyl transferase". Mol. Biol. Med. 5 (2): 107–22. PMID 2840550.
- Bergren WG, Donnell GN (1974). "A new variant of galactose-1-phosphate uridyltransferase in man: the Los Angeles variant". Ann. Hum. Genet. 37 (1): 1–8. PMID 4759900. doi:10.1111/j.1469-1809.1973.tb01808.x.
- Shih LY, Suslak L, Rosin I, et al. (1985). "Gene dosage studies supporting localization of the structural gene for galactose-1-phosphate uridyl transferase (GALT) to band p13 of chromosome 9". Am. J. Med. Genet. 19 (3): 539–43. PMID 6095663. doi:10.1002/ajmg.1320190316.
- Ashino J, Okano Y, Suyama I, et al. (1995). "Molecular characterization of galactosemia (type 1) mutations in Japanese". Hum. Mutat. 6 (1): 36–43. PMID 7550229. doi:10.1002/humu.1380060108.
- Elsas LJ, Langley S, Paulk EM, et al. (1995). "A molecular approach to galactosemia". Eur. J. Pediatr. 154 (7 Suppl 2): S21–7. PMID 7671959. doi:10.1007/BF02143798.
- Elsas LJ, Langley S, Steele E, et al. (1995). "Galactosemia: a strategy to identify new biochemical phenotypes and molecular genotypes". Am. J. Hum. Genet. 56 (3): 630–9. PMC 1801164 . PMID 7887416.
- Fridovich-Keil JL, Langley SD, Mazur LA, et al. (1995). "Identification and functional analysis of three distinct mutations in the human galactose-1-phosphate uridyltransferase gene associated with galactosemia in a single family". Am. J. Hum. Genet. 56 (3): 640–6. PMC 1801186 . PMID 7887417.
- Davit-Spraul A, Pourci ML, Ng KH, et al. (1994). "Regulatory effects of galactose on galactose-1-phosphate uridyltransferase activity on human hepatoblastoma HepG2 cells". FEBS Lett. 354 (2): 232–6. PMID 7957929. doi:10.1016/0014-5793(94)01133-8.
- Lin HC, Kirby LT, Ng WG, Reichardt JK (1994). "On the molecular nature of the Duarte variant of galactose-1-phosphate uridyl transferase (GALT)". Hum. Genet. 93 (2): 167–9. PMID 8112740. doi:10.1007/BF00210604.
- Elsas LJ, Dembure PP, Langley S, et al. (1994). "A common mutation associated with the Duarte galactosemia allele". Am. J. Hum. Genet. 54 (6): 1030–6. PMC 1918187 . PMID 8198125.
- Reichardt JK, Novelli G, Dallapiccola B (1993). "Molecular characterization of the H319Q galactosemia mutation". Hum. Mol. Genet. 2 (3): 325–6. PMID 8499924. doi:10.1093/hmg/2.3.325.
External links
- Galactose-1-P-Uridyltransferase at the US National Library of Medicine Medical Subject Headings (MeSH)
- GeneReviews/NIH/NCBI/UW entry on Galactosemia
- Galactosemia (GALT) Mutation Database
- GALT Protein Database
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Galactose-1-phosphate uridyl transferase, C-terminal domain Provide feedback
SCOP reports fold duplication with N-terminal domain. Both involved in Zn and Fe binding.
Literature references
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Wedekind JE, Frey PA, Rayment I; , Biochemistry 1995;34:11049-11061.: Three-dimensional structure of galactose-1-phosphate uridylyltransferase from Escherichia coli at 1.8 A resolution. PUBMED:7669762 EPMC:7669762
Internal database links
| SCOOP: | DcpS_C DUF4921 DUF4931 HIT |
| Similarity to PfamA using HHSearch: | DcpS_C |
External database links
| PROSITE: | PDOC00108 |
| SCOP: | 1hxp |
This tab holds annotation information from the InterPro database.
InterPro entry IPR005850
Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation.
This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding
Gene Ontology
The mapping between Pfam and Gene Ontology is provided by InterPro. If you use this data please cite InterPro.
| Molecular function | UDP-glucose:hexose-1-phosphate uridylyltransferase activity (GO:0008108) |
| Biological process | galactose metabolic process (GO:0006012) |
Domain organisation
Below is a listing of the unique domain organisations or architectures in which this domain is found. More...
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Pfam Clan
This family is a member of clan HIT (CL0265), which has the following description:
The HIT superfamily are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides [1].
The clan contains the following 8 members:
CDH CwfJ_C_1 DcpS_C DUF4921 DUF4931 GalP_UDP_tr_C GalP_UDP_transf HITAlignments
We store a range of different sequence alignments for families. As well as the seed alignment from which the family is built, we provide the full alignment, generated by searching the sequence database (reference proteomes) using the family HMM. We also generate alignments using four representative proteomes (RP) sets, the UniProtKB sequence database, the NCBI sequence database, and our metagenomics sequence database. More...
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Meta (238) |
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| RP15 (417) |
RP35 (1197) |
RP55 (2067) |
RP75 (3184) |
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| PP/heatmap | 1 | ||||||||
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| Seed (8) |
Full (2166) |
Representative proteomes | UniProt (6385) |
NCBI (11739) |
Meta (238) |
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| RP15 (417) |
RP35 (1197) |
RP55 (2067) |
RP75 (3184) |
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| Raw Stockholm | |||||||||
| Gzipped | |||||||||
You can also download a FASTA format file containing the full-length sequences for all sequences in the full alignment.
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This page displays the phylogenetic tree for this family's seed alignment. We use FastTree to calculate neighbour join trees with a local bootstrap based on 100 resamples (shown next to the tree nodes). FastTree calculates approximately-maximum-likelihood phylogenetic trees from our seed alignment.
Note: You can also download the data file for the tree.
Curation and family details
This section shows the detailed information about the Pfam family. You can see the definitions of many of the terms in this section in the glossary and a fuller explanation of the scoring system that we use in the scores section of the help pages.
Curation
| Seed source: | Prosite |
| Previous IDs: | GalP_UDP_trans_C; |
| Type: | Domain |
| Author: | Finn RD, Bateman A, Griffiths-Jones SR |
| Number in seed: | 8 |
| Number in full: | 2166 |
| Average length of the domain: | 171.10 aa |
| Average identity of full alignment: | 26 % |
| Average coverage of the sequence by the domain: | 43.08 % |
HMM information
| HMM build commands: |
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
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| Model details: |
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| Model length: | 167 | ||||||||||||
| Family (HMM) version: | 16 | ||||||||||||
| Download: | download the raw HMM for this family |
Species distribution
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Interactions
Structures
For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the GalP_UDP_tr_C domain has been found. There are 14 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.
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