# STOCKHOLM 1.0 #=GF ID Cauli_AT #=GF AC PF03233.14 #=GF DE Aphid transmission protein #=GF PI Caulimo_AT; #=GF AU Bateman A;0000-0002-6982-4660 #=GF SE Pfam-B_3118 (release 6.5) #=GF GA 24.80 24.80; #=GF TC 24.90 24.90; #=GF NC 24.60 24.70; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 10601029 #=GF RT Aphid transmission of cauliflower mosaic virus requires the #=GF RT viral PIII protein. #=GF RA Leh V, Jacquot E, Geldreich A, Hermann T, Leclerc D, Cerutti M, #=GF RA Yot P, Keller M, Blanc S; #=GF RL EMBO J 1999;18:7077-7085. #=GF RN [2] #=GF RM 6311674 #=GF RT Aphid transmission and a polypeptide are specified by a defined #=GF RT region of the cauliflower mosaic virus genome. #=GF RA Woolston CJ, Covey SN, Penswick JR, Davies JW; #=GF RL Gene 1983;23:15-23. #=GF DR INTERPRO; IPR004917; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC This protein is found in various caulimoviruses. It codes for an #=GF CC 18 kDa protein (PII), which is dispensable for infection but #=GF CC which is required for aphid transmission of the virus [2]. This #=GF CC protein interacts with the PIII protein [1]. #=GF SQ 16 #=GS VAT_CERV/1-166 AC P05397.1 #=GS J7H6U5_9VIRU/6-174 AC J7H6U5.1 #=GS Q8JTA5_9VIRU/1-165 AC Q8JTA5.1 #=GS A0A151J6W0_9HYME/27-120 AC A0A151J6W0.1 #=GS VAT_CAMVC/1-159 AC P03549.1 #=GS VAT_CAMVS/1-159 AC P03548.1 #=GS VAT_FMVD/1-164 AC P09521.1 #=GS A0A0M4J5R0_9VIRU/6-169 AC A0A0M4J5R0.1 #=GS Q5J1S4_9VIRU/1-161 AC Q5J1S4.1 #=GS A0A140GL59_9VIRU/1-163 AC A0A140GL59.1 #=GS B2D1M7_9VIRU/1-159 AC B2D1M7.1 #=GS Q88439_9VIRU/1-160 AC Q88439.1 #=GS B2CXY2_9VIRU/1-167 AC B2CXY2.1 #=GS Q7THB7_9VIRU/1-167 AC Q7THB7.1 #=GS VAT_CAMVE/1-159 AC Q02966.1 #=GS VAT_CAMVN/1-159 AC Q00965.1 VAT_CERV/1-166 .......MS.-LTTYPHIYKK.EQILKLKRLN..KLSNDRKFFFSS..VKGTLPGIISHCNNINEILGRCYLGICKLNSFFGLS........KDPSD..........KLSVSKSP--SVYTLP.SKIFKEGGGNG.DNT..TTQTDILKNAQDqvi..lskKIDELQTQVKELSSK.IEPEPLTKEDIKKTYETLSRIESGLKGIIG............ J7H6U5_9VIRU/6-174 .....tn--.EATQMPHIYKK.GRILKFKKLNegIDRTNRKYLFSS..HGSGIQTVVNHCNNLNQVVARNFLQLAKLLSYFGLS........KDPSE..........DYSKDPSVFKRFFKDLpSTSFKKGGDKK.DKNeiLEKLTSLIEKQG.......tKLRDLESKIDNFVKN.DASKDDIKDLRIDVRRRLDSIDESLKKIIG............ Q8JTA5_9VIRU/1-165 .......MS.NAQANPHIYKK.DKYVRLKPLE.pTSSKKRRYIFASndETSSIKTIAAHCNNLNTIVAKNWLKLSKLLSYLGLE........KDESE..........AYSKNKVPFGNFFTKL.RAS--KVGEDK.EKT..ANLLPTLQEMSS........RIGKISEETKKLAENdVVTNKQLETIIKDFDRRLSEIQNSVKAIVG............ A0A151J6W0_9HYME/27-120 taklyme--.-----------.----------..------------..------------------------------------........-----..........ALKERKQMINQWMQ-S.VNILRQRDNNI.QNG..LREIETLREISR.......eKKKNLEEVEQFLKDQ.IVNNKEIEQLIKYSEKKLTAVQEKQRKIV-k........... VAT_CAMVC/1-159 .......MS.-ITGQPHVYKK.DTIIRLKPLS..LNSNNRSYVFSS..SKGNIQNIINHLNNLNEIVGRSLLGIWKINSYFGLS........KDPSE..........--SKSKNP--SVFNTA.KNIFKSRGVDY.SSQ..LKEVKSLLEAQN.......tRIKNLENAIQSLDNK.IEPEPLTKEEVKELKESINSIKEGLKNIIG............ VAT_CAMVS/1-159 .......MS.-ITGQPHVYKK.DTIIRLKPLS..LNSNNRSYVFSS..SKGNIQNIINHLNNLNEIVGRSLLGIWKINSYFGLS........KDPSE..........--SKSKNP--SVFNTA.KTIFKSGGVDY.SSQ..LKEIKSLLEAQN.......tRIKSLEKAIQSLENK.IEPEPLTKEEVKELKESINSIKEGLKNIIG............ VAT_FMVD/1-164 .......MSkDHLDFPHVYKK.NKVLKLKPLD..LSKNPRSYYFSS..QNGSIQAIINHCNNINQITARNWLKLSKVLSYFGLE........KDTSD..........SISKNKSPFNRFLKDI.SHIFREGEGST.KKA..SELGEILEKIKN........LDLKIENLNKRIPDN.LVTKALIKELVKDFDERLTEVRDDIKKVIG............ A0A0M4J5R0_9VIRU/6-169 .....tn--.EATQKPHIYKK.GKILTFKKLNegIDRTDRTYLFSS..KSSGIAAVNNHCNNINQILGRTYLGTAKLLSYFGLS........KDPSE..........DFSKEPSVFKKFFKDI.PSSSNE-GENV.EKT..LDNLKDLIEKQN.......sKLKNLEEKIDQLAKQ.-TPEKAVNDLRDNLKKNLEEINDNLKKILG............ Q5J1S4_9VIRU/1-161 .......MS.DLTKLPHIYKKgETIVRLKPLA..INKNDRVYVFSS..AKSNIQSITNSLNNLNEIVGRILLGTWKINSFFGLS........KDPSE..........--STSKNP--SVFDNA.KTIFKSGGVDN.TAL..LKEIKTLLESQN.......tRIKNLENQSKSLTDK.IEPEPLTKDEVKDLKESIRFIRDKLKDIIG............ A0A140GL59_9VIRU/1-163 ..mssnp--.-LLQHPHVYKK.GKILNLKKLDegTNKPKRVYNFAS..SSGNITTIQNHCNNLNQIVGRNFLGIAKLLSYFGLS........KDPSE..........KFS--KEP--TVYNKF.RNLFSDRGRDK.DLQ..PLLEKTYDKLSN........LDNKIEKQDIDLKKL.INREPVSRKEIEDFSREIKEIKEKLVAILG............ B2D1M7_9VIRU/1-159 ....man--.KMLTYPHIYKK.GLIYEFKSLD..DKSNPRRYTFSSdeNSAGLKPIIRHLNNINQITARNWLKLTKLLAYLGLE........KDKTN..........GLSKKPSPWDQLLKDI.EKIFHRSSSSKgNDQ..TKLLEKLEEISH........KLPK--------AEN.LVTREELSGIIKSFHEELKEVKSMIKSVIG............ Q88439_9VIRU/1-160 .......MS.-FRREPHIYYK.KQYLTLNTQN..VERGEPEYLYVG..GRG-IEGCLKHLNNINVVCGNIHMMNYYICKTLGIKtsiyrntpEDNSNpgllsllgkpQESSFQNPLEKKIDNL.SDKIRDLGSNT.TGI..-ETEKKLADLSN........KISELERKISSLNTD.------------------------------dimnllkklddk B2CXY2_9VIRU/1-167 .......MS.-ITSKSHIYKKgTTIIPLKNLA..INTDGKKYVFNS..LKPNIQSVVNHCNNLNEVCGRILLGIWKLCSYFGLS........KDPSE..........--PHSKNP--SVYDHA.KTIFKSGGVDH.SVI..LREIKSLIETQQtknknlenKIDNLEKSIKDLSHK.IEPEPLTHEKIKDFSNALKAIDDKLKNVIG............ Q7THB7_9VIRU/1-167 .......MS.NASANPHIYKK.DKYVRLKSLE.pVSSKQRQYYFATddKKSNIKSIAAHCNNLNVVVAKSWLKLSKLLSYLGLE........KDESE..........AYSKNKLPFGQFFKDL.TKSFQEGGDNK.EEK..TNLLPTLQEMSN........RIGKISEETKKLAEQdTVTNKQLEAMVKDFDKRLKEIQDSVKAIVG............ VAT_CAMVE/1-159 .....mr--.-ITGQPHVYKK.DTIIRLKPLS..LNSNNRSYVFSS..SKGNIQNIINHLNNLNEIVGRSLLGIWKINSYFGLS........KDPSE..........--SKSKNP--SVFNTA.KTIFKSGGVDY.SSQ..LKEIKSLLEAQN.......tRIKNLEKAIQSLDNK.IEPEPLTKKEVKELKESINSIKEGLKNIIG............ VAT_CAMVN/1-159 .......MS.-ITGQPHVYKK.DTIIRLKPLS..LNSNNRSYVFSS..SKGNIQNIINHLNNLNEIVGRSLLGIWKINSYFGLS........KDPSE..........--SKSKNP--SVFNTA.KTIFKSGGVDY.SSQ..LKEIKSLLEAQN.......tRIKSLENAIQSLDNK.IEPEPLTKEEVKELKESINSIKEGLKNIIG............ #=GC seq_cons .......MS..hospPHlYKK.spIl+LKsLs..lspssRpYlFSS..ppusIpsIlNHhNNLNpIlGRshLtlhKl.SYFGLS........KDPSE..........t.SKsKsP..phassh.psIF+puGsst.ssp..hcplcoLhEhpN.......p+IcpLEpthppLscp.ltscshh+c.lK-hccplppIc-sLKsIIG............ //