# STOCKHOLM 1.0
#=GF ID Cauli_AT
#=GF AC PF03233.14
#=GF DE Aphid transmission protein
#=GF AU Bateman A;0000-0002-6982-4660
#=GF GA 24.8 24.8
#=GF NC 24.6 24.7
#=GF TC 24.9 24.9
#=GF PI Caulimo_AT; 
#=GF SE Pfam-B_3118 (release 6.5)
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Family
#=GF RN [1]
#=GF RM 10601029
#=GF RT Aphid transmission of cauliflower mosaic virus requires the
#=GF RT viral PIII protein. 
#=GF RA Leh V, Jacquot E, Geldreich A, Hermann T, Leclerc D, Cerutti M,
#=GF RA Yot P, Keller M, Blanc S; 
#=GF RL EMBO J 1999;18:7077-7085.
#=GF RN [2]
#=GF RM 6311674
#=GF RT Aphid transmission and a polypeptide are specified by a defined
#=GF RT region of the cauliflower mosaic virus genome. 
#=GF RA Woolston CJ, Covey SN, Penswick JR, Davies JW; 
#=GF RL Gene 1983;23:15-23.
#=GF DR INTERPRO; IPR004917;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC This protein is found in various caulimoviruses. It codes for an
#=GF CC 18 kDa protein (PII), which is dispensable for infection but
#=GF CC which is required for aphid transmission of the virus [2]. This
#=GF CC protein interacts with the PIII protein [1].
#=GF SQ 13
Q7THB7.1/1-167      MS.NASANPHIYKK.DKYVRLKSLE.pVSSKQRQYYFATddKKSNIKSIAAHCNNLNVVVAKSWLKLSKLLSYLGLE........KDESE..........AYSKNKLPFGQFFKDLTKSFQEGGDNK.EEKTNLLPTLQEMSN........RIGKISEETKKLAEQdTVTNKQLEAMVKDFDKRLKEIQDSVKAIVG
P09521.1/1-164      MSkDHLDFPHVYKK.NKVLKLKPLD..LSKNPRSYYFSS..QNGSIQAIINHCNNINQITARNWLKLSKVLSYFGLE........KDTSD..........SISKNKSPFNRFLKDISHIFREGEGST.KKASELGEILEKIKN........LDLKIENLNKRIPDN.LVTKALIKELVKDFDERLTEVRDDIKKVIG
Q8JTA5.1/1-165      MS.NAQANPHIYKK.DKYVRLKPLE.pTSSKKRRYIFASndETSSIKTIAAHCNNLNTIVAKNWLKLSKLLSYLGLE........KDESE..........AYSKNKVPFGNFFTKLRAS--KVGEDK.EKTANLLPTLQEMSS........RIGKISEETKKLAENdVVTNKQLETIIKDFDRRLSEIQNSVKAIVG
P05397.1/1-166      MS.-LTTYPHIYKK.EQILKLKRLN..KLSNDRKFFFSS..VKGTLPGIISHCNNINEILGRCYLGICKLNSFFGLS........KDPSD..........KLSVSKSP--SVYTLPSKIFKEGGGNG.DNTTTQTDILKNAQDqvi..lskKIDELQTQVKELSSK.IEPEPLTKEDIKKTYETLSRIESGLKGIIG
Q5J1S4.1/1-161      MS.DLTKLPHIYKKgETIVRLKPLA..INKNDRVYVFSS..AKSNIQSITNSLNNLNEIVGRILLGTWKINSFFGLS........KDPSE..........--STSKNP--SVFDNAKTIFKSGGVDN.TALLKEIKTLLESQN.......tRIKNLENQSKSLTDK.IEPEPLTKDEVKDLKESIRFIRDKLKDIIG
P03548.1/1-159      MS.-ITGQPHVYKK.DTIIRLKPLS..LNSNNRSYVFSS..SKGNIQNIINHLNNLNEIVGRSLLGIWKINSYFGLS........KDPSE..........--SKSKNP--SVFNTAKTIFKSGGVDY.SSQLKEIKSLLEAQN.......tRIKSLEKAIQSLENK.IEPEPLTKEEVKELKESINSIKEGLKNIIG
P03549.1/1-159      MS.-ITGQPHVYKK.DTIIRLKPLS..LNSNNRSYVFSS..SKGNIQNIINHLNNLNEIVGRSLLGIWKINSYFGLS........KDPSE..........--SKSKNP--SVFNTAKNIFKSRGVDY.SSQLKEVKSLLEAQN.......tRIKNLENAIQSLDNK.IEPEPLTKEEVKELKESINSIKEGLKNIIG
B2CXY2.1/1-167      MS.-ITSKSHIYKKgTTIIPLKNLA..INTDGKKYVFNS..LKPNIQSVVNHCNNLNEVCGRILLGIWKLCSYFGLS........KDPSE..........--PHSKNP--SVYDHAKTIFKSGGVDH.SVILREIKSLIETQQtknknlenKIDNLEKSIKDLSHK.IEPEPLTHEKIKDFSNALKAIDDKLKNVIG
A0A140GL59.1/6-163  --.-LLQHPHVYKK.GKILNLKKLDegTNKPKRVYNFAS..SSGNITTIQNHCNNLNQIVGRNFLGIAKLLSYFGLS........KDPSE..........KFS--KEP--TVYNKFRNLFSDRGRDK.DLQPLLEKTYDKLSN........LDNKIEKQDIDLKKL.INREPVSRKEIEDFSREIKEIKEKLVAILG
A0A0M4J5R0.1/8-169  --.EATQKPHIYKK.GKILTFKKLNegIDRTDRTYLFSS..KSSGIAAVNNHCNNINQILGRTYLGTAKLLSYFGLS........KDPSE..........DFSKEPSVFKKFFKDIPSSSNE-GENV.EKTLDNLKDLIEKQN.......sKLKNLEEKIDQLAKQ.-TPEKAVNDLRDNLKKNLEEINDNLKKILG
B2D1M7.1/4-159      --.KMLTYPHIYKK.GLIYEFKSLD..DKSNPRRYTFSSdeNSAGLKPIIRHLNNINQITARNWLKLTKLLAYLGLE........KDKTN..........GLSKKPSPWDQLLKDIEKIFHRSSSSKgNDQTKLLEKLEEISH........KLPK--------AEN.LVTREELSGIIKSFHEELKEVKSMIKSVIG
Q88439.1/1-148      MS.-FRREPHIYYK.KQYLTLNTQN..VERGEPEYLYVG..GRG-IEGCLKHLNNINVVCGNIHMMNYYICKTLGIKtsiyrntpEDNSNpgllsllgkpQESSFQNPLEKKIDNLSDKIRDLGSNT.TGI-ETEKKLADLSN........KISELERKISSLNTD.------------------------------
A0A151J6W0.1/35-119 --.-----------.----------..------------..------------------------------------........-----..........-LKERKQMINQWMQ-SVNILRQRDNNI.QNGLREIETLREISR.......eKKKNLEEVEQFLKDQ.IVNNKEIEQLIKYSEKKLTAVQEKQRKIV-
//