# STOCKHOLM 1.0
#=GF ID   Cauli_AT
#=GF AC   PF03233.14
#=GF DE   Aphid transmission protein
#=GF PI   Caulimo_AT; 
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_3118 (release 6.5)
#=GF GA   24.80 24.80;
#=GF TC   24.90 24.90;
#=GF NC   24.60 24.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   10601029
#=GF RT   Aphid transmission of cauliflower mosaic virus requires the
#=GF RT   viral PIII protein. 
#=GF RA   Leh V, Jacquot E, Geldreich A, Hermann T, Leclerc D, Cerutti M,
#=GF RA   Yot P, Keller M, Blanc S; 
#=GF RL   EMBO J 1999;18:7077-7085.
#=GF RN   [2]
#=GF RM   6311674
#=GF RT   Aphid transmission and a polypeptide are specified by a defined
#=GF RT   region of the cauliflower mosaic virus genome. 
#=GF RA   Woolston CJ, Covey SN, Penswick JR, Davies JW; 
#=GF RL   Gene 1983;23:15-23.
#=GF DR   INTERPRO; IPR004917;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This protein is found in various caulimoviruses. It codes for an
#=GF CC   18 kDa protein (PII), which is dispensable for infection but
#=GF CC   which is required for aphid transmission of the virus [2]. This
#=GF CC   protein interacts with the PIII protein [1].
#=GF SQ   6
#=GS Q83166_9VIRU/1-159  AC Q83166.1
#=GS Q5J1S4_9VIRU/1-161  AC Q5J1S4.1
#=GS VAT_CERV/1-166      AC P05397.1
#=GS VAT_FMVD/1-164      AC P09521.1
#=GS Q8JTA5_9VIRU/1-165  AC Q8JTA5.1
#=GS Q7THB7_9VIRU/1-167  AC Q7THB7.1
Q83166_9VIRU/1-159             MS..ITGQPHVYKK.DTIIRLKPLS.LNSNNRSYVFSS..SKGNIQNIINHLNNLNEIVGRSLLGIWKINSYFGLSKDPSE..SKSKNP..SVFNTAKTIFKSGGVDYSSQLKEIKSLLEAQN.....TRIKNLEKAIQSLDNK.IEPEPLTKKEVKELKESINSIKEGLKNIIG
Q5J1S4_9VIRU/1-161             MS.DLTKLPHIYKKGETIVRLKPLA.INKNDRVYVFSS..AKSNIQSITNSLNNLNEIVGRILLGTWKINSFFGLSKDPSE..STSKNP..SVFDNAKTIFKSGGVDNTALLKEIKTLLESQN.....TRIKNLENQSKSLTDK.IEPEPLTKDEVKDLKESIRFIRDKLKDIIG
VAT_CERV/1-166                 MS..LTTYPHIYKK.EQILKLKRLN.KLSNDRKFFFSS..VKGTLPGIISHCNNINEILGRCYLGICKLNSFFGLSKDPSDKLSVSKSP..SVYTLPSKIFKEGGGNGDNTTTQTDILKNAQDQVILSKKIDELQTQVKELSSK.IEPEPLTKEDIKKTYETLSRIESGLKGIIG
VAT_FMVD/1-164                 MSKDHLDFPHVYKK.NKVLKLKPLD.LSKNPRSYYFSS..QNGSIQAIINHCNNINQITARNWLKLSKVLSYFGLEKDTSDSISKNKSPFNRFLKDISHIFREGEGSTKKASELGEILEKIKN......LDLKIENLNKRIPDN.LVTKALIKELVKDFDERLTEVRDDIKKVIG
Q8JTA5_9VIRU/1-165             MS.NAQANPHIYKK.DKYVRLKPLEPTSSKKRRYIFASNDETSSIKTIAAHCNNLNTIVAKNWLKLSKLLSYLGLEKDESEAYSKNKVPFGNFFTKLRAS..KVGEDKEKTANLLPTLQEMSS......RIGKISEETKKLAENDVVTNKQLETIIKDFDRRLSEIQNSVKAIVG
Q7THB7_9VIRU/1-167             MS.NASANPHIYKK.DKYVRLKSLEPVSSKQRQYYFATDDKKSNIKSIAAHCNNLNVVVAKSWLKLSKLLSYLGLEKDESEAYSKNKLPFGQFFKDLTKSFQEGGDNKEEKTNLLPTLQEMSN......RIGKISEETKKLAEQDTVTNKQLEAMVKDFDKRLKEIQDSVKAIVG
#=GC seq_cons                  MS.shos.PHIYKK.-pllRLKPLs.lsSNsRpYhFSS..pKusIpuIhsHCNNLNpIVuRsaLtlsKl.SYFGLpKDsSEthSKsKsP..shFsshppIF+cGGsspcppsp.lcoLpEhpN......RItclpppsKcLs-p.l.scsLhKc.VKDhcEpLscIc-ulKsIIG
//