# STOCKHOLM 1.0 #=GF ID Prothymosin #=GF AC PF03247.15 #=GF DE Prothymosin/parathymosin family #=GF AU Bateman A;0000-0002-6982-4660 #=GF SE Pfam-B_3463 (release 6.5) #=GF GA 23.90 23.90; #=GF TC 24.40 24.40; #=GF NC 23.50 23.80; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 10854063 #=GF RT Nuclear distribution of prothymosin alpha and parathymosin: #=GF RT evidence that prothymosin alpha is associated with RNA synthesis #=GF RT processing and parathymosin with early DNA replication. #=GF RA Vareli K, Frangou-Lazaridis M, van der Kraan I, Tsolas O, van #=GF RA Driel R; #=GF RL Exp Cell Res 2000;257:152-161. #=GF DR INTERPRO; IPR004931; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC Prothymosin alpha and parathymosin are two ubiquitous small #=GF CC acidic nuclear proteins that are thought to be involved in cell #=GF CC cycle progression, proliferation, and cell differentiation [1]. #=GF SQ 15 #=GS F1M7I3_RAT/2-93 AC F1M7I3.1 #=GS F6RMX5_ORNAN/7-115 AC F6RMX5.1 #=GS G3TQY9_LOXAF/11-113 AC G3TQY9.1 #=GS G1NYB1_MYOLU/2-109 AC G1NYB1.1 #=GS H3ARG9_LATCH/2-108 AC H3ARG9.1 #=GS W5LZQ3_LEPOC/2-109 AC W5LZQ3.1 #=GS Q5BL59_XENTR/2-107 AC Q5BL59.1 #=GS PTMAB_DANRE/2-105 AC A5PLC8.1 #=GS Q54B17_DICDI/411-515 AC Q54B17.1 #=GS W5M8Z6_LEPOC/2-111 AC W5M8Z6.1 #=GS Q28G57_XENTR/2-116 AC Q28G57.1 #=GS I3J8B1_ORENI/2-100 AC I3J8B1.1 #=GS E7F290_DANRE/2-112 AC E7F290.1 #=GS PTMS_BOVIN/2-99 AC P08814.2 #=GS H3AKK6_LATCH/2-103 AC H3AKK6.1 F1M7I3_RAT/2-93 SDVVVDTSS..EITTEVLKE..KEA.VEEAENGR......DAPANGDA.NEENGEQEADNEA...DEEEEEDG..EEEEEEEGDGEEEDGD.............KAED....GED....VHTEKQQMDED F6RMX5_ORNAN/7-115 SDTAVDTSS..EISTKDLKEK.KEV.VEETENGR......DAPANGNAPSRHRGWEKAYHEV....DNEVEEGGGRRPSRPTRAGEEEDGD.EDDEAETATGKRAAED....DED..EDVDTKKQKTDED G3TQY9_LOXAF/11-113 ...........QLFNLDLKEK.KEV.VEEAENGR......DAPANGNAENEENGEQEADNEVAFLD.KKAEEGTVVDLVLNCSPGEEEDGD.EDEEAEAATGKRAAED....DED..DDVDTKKQKTDED G1NYB1_MYOLU/2-109 SDTAVDTSS..EITTKDLKEK.KEV.VEETENGR......DAPANGNA.NEENGEQEADNEV....DEEEEEGGEEEEEEEEGDGEEEDGD.EDEEAEAATGKRAAED....DED..DDVDTKKQKTDED H3ARG9_LATCH/2-108 SETKVDHPS..ETPAKDLKEK.KE..VEGSGNGK......EVPANGNAENEENGEQEVENEV...DEEEEEEAGEEDEEDDEGEGEEED...DDEEAEGATGKRAAED....EED..DEVETKKQKKDED W5LZQ3_LEPOC/2-109 ADTKVDTSS..EIPTKDLKEK.KEL.VEDAENGK......DTPANGNAENEENGEQEAENEV...EDDDEDEVGEEDDEEDDGEGEDDE...DDEEAEGGAGKRAAED....DDEVRDDVETKKQKTD.. Q5BL59_XENTR/2-107 SDTAVDASV..EKTPKDLKAKEKEV.VEEAENGK......DKPTNGNAENEENGEQE........NEGDEEEEVDEEDEEDEVEGDDDD...EDDEVEGATGKRAAED....DEDDDDDVETKKQKTDED PTMAB_DANRE/2-105 ADAKVDSAT..EISAKDLKE..KKL.IEEKENGK......DA.TNGKE.NEENGEPEID........DEDDDEVDEDDE..EGEGDEDEDEDDDDEDLGGGTKRGADDDEDEDEDDEDDVDPKKQKV... Q54B17_DICDI/411-515 KDKKEKLASFIKLSFYNLKKK.KEL.LKKSKKLK......NNNNNNNEDDLLNSQQVPDDNMEFEQQQQQ.....QKEEEEKKEKEEEDGEEEEEEEEIT............EKQIFEDIKLNKEQFFDL W5M8Z6_LEPOC/2-111 ADTAVDTTTTTEVTPKDLKEK.KEV.AEEVEKTEKENGSGDAPANGT...EANGADHGEETPEDEEEEDE.....EAEGEGEEDEEGEEGAEEE..ADGHPVKRPAEE....EEK....VETKKQKTENG Q28G57_XENTR/2-116 ADTDVDTTTAEVPVTKDLKEK.KEV.VEEPEKAENG..KGDAPSNGT...EENGADHGAQNDDAEEEDEEGDVEGEGEGEGEEEEDEEEGEGDENETDGLSVKRPAED....EEK....TETKKQKTENG I3J8B1_ORENI/2-100 ADTAVDTTATAEVTAKELKEK.KEAEVEEK....TD..NGDAPANGT.....NGAEHSDKVEETTEEEHKNG............EGNAEEAPPAEETDAQPVKRAAEE....EEE...KVETKKQKTEEN E7F290_DANRE/2-112 ADTAVDTTTTSEITAKDLKEK.KEV.VEEAAEAAKENGSEDAPANGNG..TTNGASHEEEEAHEDEEGGE.....DEEA..GEAEEEENGAEEEAAAEEHPVKRPAEE....EEA....VETKKQKTEEN PTMS_BOVIN/2-99 SEKSVEAAA..ELSAKDLKEK.KEK.VEEKAGRK.......ERKKEVVEEEENGAEEEEEET.............AEDGEEEDDGDEEDEEEEEEEDEGPALVRAAEE....EDE....ADPKRQKTENG H3AKK6_LATCH/2-103 SDAAADTTE..EVSTKDLKEK.....ISGKEKSEP....GAETTDVNGEEEENGAEADEETPEKLNDED......EGDEEDEEEVDDEEEEDEEDEEEGQAVKRRADD....DDN....TGKKKQKT... #=GC seq_cons uDTsVDToo..ElosKDLKEK.KEl.VEEsEsu+......DAPANGNu.sEENGtpcs-pps...p----p-...E--pEpEt-GEEE-s-.E--EsEusssKRuAED....-E-...cV-TKKQKT--s //