# STOCKHOLM 1.0
#=GF ID   Retrotrans_gag
#=GF AC   PF03732.18
#=GF DE   Retrotransposon gag protein 
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF SE   Pfam-B_3194 (release 7.0)
#=GF GA   23.20 23.20;
#=GF TC   23.20 23.20;
#=GF NC   23.10 23.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cut_ga HMM metaseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   11600699
#=GF RT   Pyret, a Ty3/Gypsy retrotransposon in Magnaporthe grisea
#=GF RT   contains an extra domain between the nucleocapsid and protease
#=GF RT   domains. 
#=GF RA   Nakayashiki H, Matsuo H, Chuma I, Ikeda K, Betsuyaku S, Kusaba
#=GF RA   M, Tosa Y, Mayama S; 
#=GF RL   Nucleic Acids Res 2001;29:4106-4113.
#=GF DR   INTERPRO; IPR005162;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   Gag or Capsid-like proteins from LTR retrotransposons. There is
#=GF CC   a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae
#=GF CC   gag-proteins, but is poorly conserved [1].
#=GF SQ   7
#=GS EBF39844.1/79-165 DE [subseq from] hypothetical protein GOS_9604200 [marine metagenome]
#=GS ECO95106.1/56-144 DE [subseq from] hypothetical protein GOS_3434657 [marine metagenome]
#=GS EBK03490.1/95-169 DE [subseq from] hypothetical protein GOS_8799202 [marine metagenome]
#=GS ECR19682.1/61-134 DE [subseq from] hypothetical protein GOS_6148351 [marine metagenome]
#=GS ECJ67355.1/53-141 DE [subseq from] hypothetical protein GOS_3415347 [marine metagenome]
#=GS ECP78032.1/4-58   DE [subseq from] hypothetical protein GOS_4723249 [marine metagenome]
#=GS ECO23044.1/99-156 DE [subseq from] hypothetical protein GOS_6310143 [marine metagenome]
EBF39844.1/79-165         --AINCLEDHALIWFRSLAQPPQD----LAQLTALMQQTFRDVDEQRQLRQELRRLRQ.-QTSVQDYVHHFRELMVRIQD.....-MALLDRIEAFILGLK-
ECO95106.1/56-144         --AFHLFSGPAANWYMSMRSSGRL--QNWNHLIHELRKAFVHPELDTLIRSRIYQRRQqRNETFQEYYFDMDKMFRSMIC.....PMNDQEQLDILRR----
EBK03490.1/95-169         -YFFLMLDGTTHTWLKGLPPNSIS---SWAELKARFIQNFKDTCKQPMSIVDLTNCKQeEGESTTHWVCRVKEIINSSD-.....-----------------
ECR19682.1/61-134         --AILLLRGKSADWIANLIEEKDPAVTSWTELKKKFQDRFCVKHTLSEKTRLITDLKMtNSESCSDFFDRCKSNLN----.....-----------------
ECJ67355.1/53-141         -YASTRLSGAAANWYRR-QEEQIF---NWPQFKDQLILAFPETFDEADIHRQLEAVKLeKNESYESYVYRVDALAQKGD-.....-FSTSATLKYIIKGLR-
ECP78032.1/4-58           -----------------------------------------PAYYTRDMIKKLQHLKQ.GSETVTKYYDDLQTTLLHSSL.....EESEDDFMDRFWGGLNR
ECO23044.1/99-156         --------------------------------------------PEARLINKWSQLKQvKDEAVQAYYQRMKKVVRSLEKqkepvVLDAKQQLHSFTMGLKP
#=GC PP_cons              .67789************999999**899************99999************.***********9999889886.....6999**9999999*985
#=GC RF                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx
//