Summary: SpoVA protein
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SpoVA protein Provide feedback
Members of this family are all transcribed from the spoVA operon. These proteins are poorly characterised, but are thought to be involved in dipicolinic acid transport into the developing forespore during sporulation .
Tovar-Rojo F, Chander M, Setlow B, Setlow P; , J Bacteriol 2002;184:584-587.: The products of the spoVA operon are involved in dipicolinic acid uptake into developing spores of Bacillus subtilis. PUBMED:11751839 EPMC:11751839
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR005562
Members of this family are all transcribed from the spoVA operon. These proteins are poorly characterised, but are thought to be involved in dipicolinic acid transport into the developing forespore during sporulation [PUBMED:11751839].
- the number of sequences which exhibit this architecture
a textual description of the architecture, e.g. Gla, EGF x 2, Trypsin.
This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
- the UniProt description of the protein sequence
- the number of residues in the sequence
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We make a range of alignments for each Pfam-A family:
- the curated alignment from which the HMM for the family is built
- the alignment generated by searching the sequence database using the HMM
- Representative Proteomes (RPs) at 15%, 35%, 55% and 75% co-membership thresholds
- alignment generated by searching the NCBI sequence database using the family HMM
- alignment generated by searching the metagenomics sequence database using the family HMM
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1Cannot generate PP/Heatmap alignments for seeds; no PP data available
Key: available, not generated, — not available.
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Curation and family details
|Number in seed:||73|
|Number in full:||1094|
|Average length of the domain:||114.50 aa|
|Average identity of full alignment:||41 %|
|Average coverage of the sequence by the domain:||85.14 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||8|
|Download:||download the raw HMM for this family|
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