# STOCKHOLM 1.0
#=GF ID   RgpF
#=GF AC   PF05045.13
#=GF DE   Rhamnan synthesis protein F
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_5448 (release 7.7)
#=GF GA   25.00 25.00;
#=GF TC   26.40 25.00;
#=GF NC   24.60 24.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   12010977
#=GF RT   Expression and characterization of streptococcal rgp genes
#=GF RT   required for rhamnan synthesis in Escherichia coli. 
#=GF RA   Shibata Y, Yamashita Y, Ozaki K, Nakano Y, Koga T; 
#=GF RL   Infect Immun 2002;70:2891-2898.
#=GF DR   INTERPRO; IPR007739;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of a group of proteins which are related to
#=GF CC   the Streptococcus rhamnose-glucose polysaccharide assembly
#=GF CC   protein (RgpF). Rhamnan backbones are found in several O
#=GF CC   polysaccharides of phytopathogenic bacteria and are regarded as
#=GF CC   pathogenic factors [1].
#=GF SQ   14
#=GS C8XIL9_NAKMY/34-530  AC C8XIL9.1
#=GS R7KW37_9FIRM/36-532  AC R7KW37.1
#=GS R7QXS2_9FIRM/41-544  AC R7QXS2.1
#=GS E3GGI4_9FIRM/41-544  AC E3GGI4.1
#=GS A1A3K0_BIFAA/42-543  AC A1A3K0.1
#=GS R7IN55_9FIRM/42-545  AC R7IN55.1
#=GS R7R0Y9_9FIRM/36-529  AC R7R0Y9.1
#=GS R7KYH8_9FIRM/34-542  AC R7KYH8.1
#=GS Q9CIZ9_LACLA/34-519  AC Q9CIZ9.1
#=GS F9VGU7_LACGL/34-518  AC F9VGU7.1
#=GS Q5M3F8_STRT2/34-518  AC Q5M3F8.1
#=GS Q8DUS1_STRMU/34-515  AC Q8DUS1.1
#=GS B9DU29_STRU0/34-515  AC B9DU29.1
#=GS Q9A0G0_STRP1/34-514  AC Q9A0G0.1
C8XIL9_NAKMY/34-530             IFVVSNSTLTPEGREKLAD..VADTVLARENVGFDVWGYKEAMEAF.GRDRLAEYDELILMNYTFFGPIFPFAETFTAMDAREDIDFWGLTA...........HGEV.DPNPFPD.TTGTLPLHIQSHWIAVRKTMFTSIEFAWYWDKMPMVTSYTDSILQHESKFTQHFADRGFRYSILFDPSRY.....PTTHPVFDSADLMLGD.RCPILKRRMFFHE..PTYLERNAILGRRVMEIVSR.TDYPVDLIWRNVVRSAEPRTLYTNMSMLSVVP.....DVDTGFRPDPPLRICVLAHIFYEDMTDEMMGWIGNIPVPFDLVVTTTSAAKKEAIESALEAYA.LKSVEVRLVESNRGRAESAFLIACRDVLTSGEYDLVLKIHSKK..SPQNGA.NLGQLFKHHSVDNLLSSPGYVASILGMFQSQPSLGMVFPPVVNIG..FPTLGH.SWFTN...REAAHELADQ.LGI..HTIFDRTT.PLAPNGTMFWARPESLAKLARHDFDYSQFAAEHEGWSDGMLGHVIERLYGYAVLDAG.
R7KW37_9FIRM/36-532             LIVIANGKADENAVKMFES..IADKVVIRENKGFDIGAWQQGITEICGREELAKYDSLTLFNDSFFGPFYPFADIYKEME.SRSKDYWGLSV...........HGEA.NGSGLC..PYGYRPRYIQTYFMVFEKDLLHSEDFFSFWEKLPEFKSYNELAEKFVAVMTMHFSDLGYEWDVLCDTSDLEGERSKNFDQHTFNIYEMVANRRFPIIKRRSFHTDRAVYLQYSNGSELFRALEYIEKNYDYDISLIFEHLLRLYEPETLKNSLCLDYVLPDIGSTELKKGES.......AVIAHLVYDDMFERYGHYLKNIPAETDIIITTNTPEKEARLKELYGDIA.....SVRLV.TNRGRDMSALLVGCRDILMK..YEFLCFVHDKK..SSQKEFASVGAEFDRLNWENMLHSEGYIRNIIGLFKAHSYLGMLSPFGVDHGSYFYSSVD.YWTVC...YDVSCALAQR.IGI..KTPAKDKQ.PLA.IGTCFWCRASAMRALFENDFTYEDFPAEPAD.GDGTFSHAVERLLPYAAANKG.
R7QXS2_9FIRM/41-544             ILVVCNGKLTSEGRKKLEE..VTPNVLVRENKGFDVWAYKTGLEHY.GWDKIKSFDEVIMMNFTIMGPVYPLEEMFHAMD.KRDLDFWGITK...........FHEFKDGDPFGTIPYGYIPAHIQSHFIAVRKPMLNSLEYQSYWDNMVMIHDYREAVGCHEAIFTKKFSDAGFKWDVYADLEEG.....YNNHPVLCATRRMIEEKRCPIFKRRSFMQNYDNILHDTAGENAIEAYEYIDRHTDYDVDMIWQNILRLENQADIKKNMQLNFVLPEDMSKPADDILK...NRKVALVLHFYFEDLAEYCLHYVQSMPPEADIYVTTGSEKKKELIEKTFSVLP..NKVKVILI.ENRGRDVSALLVGTKDFIMD..YDYVCFVHDKK..VTQLKPDTVGASFSYKCFENLLTSRDFVNNVLHTFEANPRVGLLTPPPPNHGDYYITVGL.EWGKN...YKITKKLAEK.LGI..TVPIAEEKEPIAPLGTMFWFRPKAMKLLFDQDWEYTDFPPEPNK.TDGTLLHAVERIYSYVVQQEGY
E3GGI4_9FIRM/41-544             ILIACNGKVCQEGKEKFKS..ITSNILIRENIGFDVWAYKESLAYY.GWDKLEEFDEVVMLNFTIMGPIYPFSEMFSIMD.QKDLDFWGCTK...........HHKI.PFDPFGRLSCGYIPEHIQSHFIAVRKSMLQSESFKNYWENMPMINDYFDAICCHEAIFTQTFEKKGFSWDVYVGTDDLRE...YTYYPLQMVPRELVENRRCPIIKRRSFFHNFSDYLDYTAGEPAYELMEYIEHFTTYDTNLIWQNILRTMHQADFKRALQLNYILSSEFSYDSKKILC...EKRIAAIFHLYFEDLIDETYRYLSSMPEEADIYITTDTEPKKKLIQEKFKDFS.CRNFKVILI.QNRGRDVSALLVATKAFIMN..YDYVCFAHDKK..VTQTKPYSIGGAFAYKCFENTLQNKNFVLNIINAFEKNPRLGMLMPAPPNNGPYYPTLGN.EWMCN...YEVTKNLIDE.LGI..KVPMDPGKEPISPLGTMFWFRPKALKVLFDKNWEYSDFPEEPNK.VDGTLLHAIERAYGLIVQSE..
A1A3K0_BIFAA/42-543             .TIVCNGKLNEAGQSILSR..YTDNLIIRPNTGFDVWAYKTALDSY.GWEKLEQFDEIVLFNATIMGPVYPFAEMFETMN.KRDLDFWGITK...........FHKV.PQDPFGRSPFGYLPEHIQSHFHAYRRSLVQSKEFQDYWNNMPQINSYYDSVGMHESLFTKRFADLGFKWDVYVNTDDLEG...FTYGPITFAAKTLIKEKRCPIFKRRSFFHDYMDTLNQSAGNAALDLFEYLRDHTDYDVNLIWQNALRTMNLADLVKNLHLDFVMPSNITTPIPE......GKRIALIMHLYYMDLLDKTLEYAKSMPEGCDFIFTVGSEENAKLVRERCKGLP..YNVDVRVI.QNRGRDVSALLIGAGKDCLK..YDYVCFAHDKK..VTQLSPYSIGDGFAYKCFENILGSKALVSNIINHFEQDPHAGLLAPTSPNHADYFGNFAS.LWGPN...FEGTKKMLEETLGV..KVPLNPYKEPIAPLGTMFWFRPKALHQLFDIDWKYEDFPPEPNK.IDGSMLHFIERAYGYLPQANGY
R7IN55_9FIRM/42-545             .LVICNGDVEEEAGKRFSG..IADEVMMRGNEGFDITAYHLGLKKY.GYNRDGKFDEVIICNSTMFGPVYPFQEMFEKMA.VRDLDFWGITN...........FHEV.PFDPFGTVKYGMLPKHVQSFFMVFRKSLTMSPEFQKYWENMPQITSYEQAIGYHEAIFTKEFADKGFQWAVYADSEELEG...YTYDPLRDFPRLMIEEKRCPVIKRRSFFHEYGEALSRSGGEGTREAMEYIEKHTDYDTSMIWKNILRLQNMADVKKRMHLNYVLP..TGIRLNKEEK...KLKTALVIHIYYEELAAMCAEYAANVPENVDIYVTVPDEKKLENAKNAFAGVK.NHTIDYRIV.GNIGRDVAPFLVGCKDLIDK..YDLIAKVHDKK..VYQVVPMSIGDSWGHMCFENMLKNTTYIDNVIATFEENPFLGLLTPPVPVHGPYYPTTGKGEWGDN...FKVAKELAEK.LGL..KVDMNPEKEPVAPLGSMFWVRTKALKGLFDYGWEYTDFPPEPIE.TDATVLHAIERIYPFCVQNEGY
R7R0Y9_9FIRM/36-529             IVVVSEGTLRQEAKKKLAF..YAEEILEYPRGGRMTEAIRAVAEAF.GWDRLGYYKEIVWVRDTVMGPLVSLGSVFRQME.QKRADFWGISE...........SFLR.EGAGEGENRNGYFPEYLDDYFLVFRKELVMSREFQDYWEN...........ERYDSGFTRKFANLGFEWDVYLDTKEYLD...ITYEPILTQAVSMIEKKGCPFFAMDAVVRDYTDALLESSGEEGRALVECLQRQNGFDMDLFWQHVLRVGNIADIQKNICANYILS....GQTSNRKKEAGQLRIALVIHIYFPELVEECYQYAQSMPEYADVYITTDSEEKKKVIYEKFRHLN.CGKLDIRVV.PNCGRDVGPFLVETGTYFRE..YDLICHTHDKK..AGQVRPGSIGLAFSDRCFHNSLRSKAFVENIIQTFEDHERLGILMPPPPNHSAYYFTLGK.GWSVN...FKVTKELADR.LGL..LVDLDETKEPVAPIGSTFWVRPKALEKLLGHEWKYENFPAEPLP.WDGTVLHAVERIYGFCAQDAGY
R7KYH8_9FIRM/34-542             ILVVINGKLAPESRDRLAD..VCDDMFVRKNEGFDAWAYKDGIEYI.GYDGLKEYDELILTNNTVYGPLRPLKDVFAEVE.NVSCDFWGLQMSYGDPEEKVYLNRTL.........PWGCRPDAIISNFRVIRSKCLHSIEFARYWQELAPVNNYTDAVYIGELQFSYDMTNAGF.VSYSLDRGEYRG...ASPSPTIHNAYDQISRLKIPYFRKRIFSSPLSHYTDCMNGTEPAKVLAYVKDHTDYDTDMIWENLIRTVNQYDLHHMLGLTEILP.......YDRSSHVTNSRIAVIFHAYYTDIFTKYIPYLESFPAGTDIYFTVGSEEKEKLFREMTAELSKKYKITFIPI.ENTGRDVSALLIGGRDVILNGGYDYICFMHDKKGIGARGSYECVGSAFSETCFDNTAITSDYVNNVIELFDTDPHLGIASPPPPTHAA.YFRFADGDWGEN...YEMVCDLVKK.YGF..NVPIAQNKPPVAPLGTVFWFRAKAMEKLAKINWKYSDFPTEPAP.PDGSIMNAIERLYSIAVQDAGY
Q9CIZ9_LACLA/34-519             VIFISNSELSEQYQQQLVD..FVDEFIQRENKGFDFAAWRDGMEQV.GFDQLKMYDSVTLMNDTCFGPLYEMAPIYEKYE.IQNIDFWGITN...........HRAYHES......KNHYFDEHIQSYYKVFNNNVINSQIFEDFWKNIVDYTNVQDVIDHYEIQSTKIFMDAGFKYESVLDTRALDAKNLLHPDFSYYAPDVILKE.KVPFIKVKAFQS.......IQSNGIAYYMLDYIDRNTDYPKSLVVDHLSTVGYPD.......LNFLLPSKMITPLSKTVL...HQTVAVHLHVYYPELLEEFLDAFKNFSFDYDLYLTTNTDEKEEIIKEMLKCKD..AKAKLVRT.PNHGRDIVPFL.ALKEELKK..YDIVGHFHTKR..SLEAAF.FAGESWRTELISMLIE...PADNIMAHFEQKQKLGIVIADIPSFFR.FNKIVN.ADNENKQIAPIMNDIWKR.MKMNKKVNFHDFNTFTMSYGTFFWAKIEVLEPLFNLEIMDREIPNEPL..PQNTILHAIERVLIYLAWDKEM
F9VGU7_LACGL/34-518             VVFISNSYLSVEGQAKLTG..LIDDFIQRENKGFDFGAWRDGMEYI.GFEQLKEYDSVTIMNDTCFGPLYDMVPYYAEYE.AREVDIWGITN...........HRDYQES......KNHGFAEHIQSYYKVFSHKVISSEVFQNFWKNIEDFENVQDVIDHYEIRSTTVFIEAGFKYETILDTRELDDSRLLHPDFSYYAPDVILRE.KVPFLKVKAFQS.......NESAGIAKFMLDYVGENTNYQKELIVAHLSSVDYPD.......ANYLLAEKYLGIAQHQII...TNKIAVHLHVFYPELLEEFMAAFAQFHFDYSLYLTTNTEEKELIIQKYLVEHQ..IQAELVRT.ANYGRDVMPFL.ALKEKLRQ..YDIIGHFHTKR..SLEASF.FAGESWRTELIDMLIK...PADNIIRNFEENDKLGIVIADIPSFFR.FNRVVD.ADNENKMIAPIMNDMWKR.MKMRKKINFHDFKTFTMSYGTFFWAKTEVLEPLFDLEIMKKEVPNEPL..PQNTILHAIERILIYLAWDKD.
Q5M3F8_STRT2/34-518             LVFISNSRLSESEVQKLRDKHLIDDFIQRENKGYDFAAWHDGMEFV.GFENLKQYDSVTVMNDTCFGPLWDMAPIYDNYESNPNVDFWGMTN...........HQGIKA.......GDIYIHEHLQSYFISFKKRLVESSVFQKFWKSVESFEDVQKVIDNYETLYTKKFRDAGFNYESILNTIPLNDKF.FHSNFTIHYPHVLLDT.GVPFIKVKTF.........DLTQHLAPYLLKEIEKRTDYPVELILSHMSDMSLPT.......PPYLLDRKVIEKSSQTYS..DTKKIAVHLHTYYVDLLEDFLKQFENFHFTYDLFLTTDSEDKKAEIQSILDKNG..KVARIFIT.GNRGRDVIPML.KLKDELSA..YDYIGHFHTKK..SPEYPY.WVGDSWRNELFSMLIQ...PADNIIANLERDDRLGLVIADIPSFFR.YTKIVD.PWNEN.RFAEGMNDLWER.MDLGRDIDFDKMNTFIMSYGTFIWFKYDALKPLFDLDLQDEEIPAEPI..PQHTILHSIERILVYLAWARRY
Q8DUS1_STRMU/34-515             VIFISNSQVADADVKMLREKHLIDDFIQRQNSGFDFAAWRDGMVFV.GFDELVTYDSVTTMNDTCFGPLWEMYSIYQEFETKTTVDFWGLTN...........NR...........ATKSFREHIQSYFISFKASVLRSTAFRDFWENIKEYQDVQKVIDQYETKVTTTLLDAGFQYDVVFDTTKEDASHMLHADFSYYNPTAILNH.RVPFIKVKAI.........DNNQHITPYLLNDIQKNSTYPIDLIVSHMSEINYPD.......FSYLLGHKYVKKRERVDL..KNQKAAVHLHVFYVDLLEEFLTAFKQFHFSYDLFITTDSDDKKAEIEEILSANS..QEAQVFVT.GNIGRDVLPML.KLKNYLST..YDFVGHFHTKK..SKEADF.WAGQSWREELIDMLVK...PADNILAQLQQNPKIGLVIADMPTFFR.YNKIVD.AWNEH.LIAPEMNTLWQK.MGMTKKIDFNAFHTFVMSYGTFVWFKYDALKPLFDLNLTDDDVPEEPL..PQNSILHAIERLLIYIAWNEHY
B9DU29_STRU0/34-515             LIFISNSSLNDSDRQELLSSGLVNEVIQRQNIGFDFAAWRDGMATV.GFESLSEYDNVTIMNDTCFGPLWDMKPYFLTYEDDEEVDFWGLTN...........NR...........QTKEFDEHIQSYFISFKKTVLSNETFLHFWRTVQDFTDVQDVIKNYETQVTTGLLKEGFRYKCIFNTVTADASGMLHADFSYYNPTAILKH.QVPFIKVKTI.........DANQSIAPYLLQVIKNQTDYPVDLIVSHMSDIHYPD.......APYLLSQKYLEKQEESDLKVSEHSIAVHLHVFYVDLLEEFLHAFTSFKFPFDLYITTDKSEKESEIKAILDSFR..VSAKIVVT.GNIGRDVLPML.KLKDELSQ..YDYIGHFHTKK..SKEADF.WAGESWRNELIDMLIK...PANTIINQFE.DPAIGIIIADIPSFFR.FNKIVT.PLNEH.LIAPEMNKLWEK.MNLSKTIDFEQFDTFVMSYGTFVWFKYDALKPLFDLNLKDGDVPKEPL..PQNSILHAVERLLIYIAWDSH.
Q9A0G0_STRP1/34-514             IVFISNSKVSHEDLKRLKNHCLIDEFLQRKNKGFDFSAWHDGLIIM.GFDKLEEFDSLTIMNDTCFGPIWEMAPYFENFEEKETVDFWGITN...........NR...........GTKAFKEHVQSYFMTFKNQVIQNKVFQQFWQSIIEYENVQEVIQHYETQLTSILLNEGFSYQTVFDTRKAESSFMPHPDFSYYNPTAILKH.HVPFIKVKAI.........DANQHIAPYLLNLIRETTNYPIDLIVSHMSQISLPD.......TKYLLSQKYLNCQRLAKQ..TCQKVAVHLHVFYVDLLDEFLTAFENWNFHYDLFITTDSDIKRKEIKEILQRKG..KTADIRVT.GNRGRDIYPML.LLKDKLSQ..YDYIGHFHTKK..SKEADF.WAGESWRKELIDMLVK...PADSILSAFETDD.IGIIIADIPSFFR.FNKIVN.AWNEH.LIAQEMMSLWRK.MDVKKQIDFQAMDTFVMSYGTFVWFKYDALKSLFDLELTQNDIPSEPL..PQNSILHAIERLLVYIAWGDSY
#=GC seq_cons                   llhluNucLsppupc+Lps..lsD-hl.RcNpGFDhtAa+-Ghchh.Ga-cLppYDplslhNsThFGPlashsshFpphE.pcslDFWGlTs...........a+th.........ssthhsEHIQSaFhsF++sllpSppFppaWcsh.phpshp-sIppaEshhTppFt-tGFpa-shhDTpchcs...hpsc.shasspshlcc.+sPhlKh+uF.p.......pssuphuhhll-hIc+pTDYsh-LIhppl.clt..s.......hsYlLspph.tphpct.p...pp+lAVhlHlaYsDLl--hhphhpshshshDlalTTso--KcchIcchhpshs..tpsclhls.sNpGRDVsshL.uhK-hlpp..YDals+hHsKK..utpssh..lGpuappchh-.llp....ssNIIspFEpss+LGllhsshPsahp.asplss.sWscN...hchhpcLhc+.hGl..clshsphcp.lhshGThFWh+scAL+sLFDh-hphpDhPsEPh..spsolLHAIERlhsYls.scsh
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