# STOCKHOLM 1.0 #=GF ID RusA #=GF AC PF05866.12 #=GF DE Endodeoxyribonuclease RusA #=GF AU Moxon SJ;0000-0003-4644-1816 #=GF SE Pfam-B_8996 (release 8.0) #=GF GA 22.80 22.80; #=GF TC 22.80 22.90; #=GF NC 22.70 22.70; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 8648624 #=GF RT Holliday junction resolvases encoded by homologous rusA genes in #=GF RT Escherichia coli K-12 and phage 82. #=GF RA Mahdi AA, Sharples GJ, Mandal TN, Lloyd RG; #=GF RL J Mol Biol 1996;257:561-573. #=GF RN [2] #=GF RM 7813450 #=GF RT Processing of intermediates in recombination and DNA repair: #=GF RT identification of a new endonuclease that specifically cleaves #=GF RT Holliday junctions. #=GF RA Sharples GJ, Chan SN, Mahdi AA, Whitby MC, Lloyd RG; #=GF RL EMBO J 1994;13:6133-6142. #=GF DR INTERPRO; IPR008822; #=GF DR SCOP; 1q8r; fa; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC This family consists of several bacterial and phage Holliday #=GF CC junction resolvase (RusA) like proteins. The RusA protein of #=GF CC Escherichia coli is an endonuclease that can resolve Holliday #=GF CC intermediates and correct the defects in genetic recombination #=GF CC and DNA repair associated with inactivation of RuvAB or RuvC #=GF CC [1,2]. #=GF SQ 74 #=GS A7ILM9_XANP2/10-133 AC A7ILM9.1 #=GS B1M2L8_METRJ/10-141 AC B1M2L8.1 #=GS G8AQL3_AZOBR/13-141 AC G8AQL3.1 #=GS D4MWK7_ANAHA/9-139 AC D4MWK7.1 #=GS R6IXV1_9CLOT/8-137 AC R6IXV1.1 #=GS F2JK68_CELLD/8-135 AC F2JK68.1 #=GS R6ZAS0_9CLOT/7-129 AC R6ZAS0.1 #=GS R7GJW3_9CLOT/7-133 AC R7GJW3.1 #=GS R7FJ42_9CLOT/8-134 AC R7FJ42.1 #=GS R5XN19_9CLOT/8-134 AC R5XN19.1 #=GS R5PTC9_9CLOT/8-134 AC R5PTC9.1 #=GS R5N6Y4_9CLOT/10-134 AC R5N6Y4.1 #=GS R6BJ44_9CLOT/8-134 AC R6BJ44.1 #=GS C4ZCC2_AGARV/13-142 AC C4ZCC2.1 #=GS R6JDN2_9CLOT/8-142 AC R6JDN2.1 #=GS D4N1J6_ANAHA/10-136 AC D4N1J6.1 #=GS A5I2H9_CLOBH/6-131 AC A5I2H9.1 #=GS Q18AD1_PEPD6/8-132 AC Q18AD1.1 #=GS Q65KQ9_BACLD/7-130 AC Q65KQ9.1 #=GS F3YCQ5_MELPT/160-289 AC F3YCQ5.1 #=GS F3YCQ5_MELPT/7-135 AC F3YCQ5.1 #=GS Q9CGS2_LACLA/11-127 AC Q9CGS2.1 #=GS R7GWU0_9FIRM/8-128 AC R7GWU0.1 #=GS Q9A0P9_STRP1/12-129 AC Q9A0P9.1 #=GS R6CHZ9_9FIRM/8-130 AC R6CHZ9.1 #=GS R5GVZ7_9FIRM/45-162 AC R5GVZ7.1 #=GS F0SXE8_SYNGF/13-128 AC F0SXE8.1 #=GS B8I135_CLOCE/16-133 AC B8I135.1 #=GS R5KJ66_9CLOT/12-130 AC R5KJ66.1 #=GS D9R8Z8_CLOSW/13-130 AC D9R8Z8.1 #=GS Q8E0Z6_STRA5/10-154 AC Q8E0Z6.1 #=GS Q832U0_ENTFA/6-135 AC Q832U0.1 #=GS F9ULN6_LACPL/10-134 AC F9ULN6.1 #=GS Q03FF0_PEDPA/7-134 AC Q03FF0.1 #=GS Q03G49_PEDPA/7-133 AC Q03G49.1 #=GS F3YBI3_MELPT/10-137 AC F3YBI3.1 #=GS YQAN_BACSU/10-138 AC P45911.1 #=GS Q5WE30_BACSK/10-138 AC Q5WE30.1 #=GS C9LU68_SELS3/11-137 AC C9LU68.1 #=GS K9TQU7_9CYAN/212-322 AC K9TQU7.1 #=GS Q119T1_TRIEI/152-267 AC Q119T1.1 #=GS D4ZMR6_ARTPN/161-274 AC D4ZMR6.1 #=GS E3PXQ4_ACESD/7-120 AC E3PXQ4.1 #=GS R5XLU7_9CLOT/7-120 AC R5XLU7.1 #=GS A6TU92_ALKMQ/7-120 AC A6TU92.1 #=GS B4U8U8_HYDS0/13-123 AC B4U8U8.1 #=GS C8WWQ1_ALIAD/7-122 AC C8WWQ1.1 #=GS A9B184_HERA2/8-122 AC A9B184.1 #=GS C5A7W3_BURGB/7-133 AC C5A7W3.1 #=GS G8MEU2_9BURK/7-134 AC G8MEU2.1 #=GS B2U8I2_RALPJ/9-142 AC B2U8I2.1 #=GS C6XEA8_METGS/7-139 AC C6XEA8.1 #=GS W0E1N2_MARPU/4-115 AC W0E1N2.1 #=GS F9ZNV1_ACICS/7-129 AC F9ZNV1.1 #=GS Q32GH7_SHIDS/8-114 AC Q32GH7.1 #=GS RUSA_ECOLI/9-115 AC P0AG74.1 #=GS RUSA_ECOLI/9-115 DR PDB; 1Q8R A; 9-115; #=GS RUSA_ECOLI/9-115 DR PDB; 2H8C A; 9-115; #=GS RUSA_ECOLI/9-115 DR PDB; 2H8C B; 9-115; #=GS RUSA_ECOLI/9-115 DR PDB; 2H8C D; 9-115; #=GS RUSA_ECOLI/9-115 DR PDB; 1Q8R B; 9-115; #=GS RUSA_ECOLI/9-115 DR PDB; 2H8E A; 9-115; #=GS RUSA_ECOLI/9-115 DR PDB; 2H8C C; 9-115; #=GS D3UXF5_XENBS/9-115 AC D3UXF5.1 #=GS Q2NTR8_SODGM/6-119 AC Q2NTR8.1 #=GS G2KMX7_MICAA/7-112 AC G2KMX7.1 #=GS Q8HAN7_BPB78/13-125 AC Q8HAN7.2 #=GS E8QXG8_ISOPI/7-112 AC E8QXG8.1 #=GS R5L6J7_9CLOT/10-128 AC R5L6J7.1 #=GS B7S400_PHATC/21-150 AC B7S400.1 #=GS B9EBL2_MACCJ/18-137 AC B9EBL2.1 #=GS E6WYD1_NITSE/11-127 AC E6WYD1.1 #=GS D5CT73_SIDLE/9-137 AC D5CT73.1 #=GS G8QMM9_AZOOP/13-141 AC G8QMM9.1 #=GS A9I8Y2_BORPD/36-164 AC A9I8Y2.1 #=GS C1D8H9_LARHH/9-138 AC C1D8H9.1 #=GS B2JU78_PARP8/29-151 AC B2JU78.1 #=GS Q2W5Y8_MAGSA/8-131 AC Q2W5Y8.1 #=GS W0P8I5_9BURK/11-139 AC W0P8I5.1 #=GS Q2G3Y0_NOVAD/9-131 AC Q2G3Y0.1 #=GS J9Z9U5_LEPFM/8-131 AC J9Z9U5.1 A7ILM9_XANP2/10-133 AGEPRG....KGRPRFGN.....GRS..........YTDEK.....TENYEAALRIAAMGAM.GA.RRPIE.......GPVA..VDIEARVPVPASW..SQKKRLSALAGDVLP...........TTKPDIDNIVK.TWDAL..........NHVVFNDDRQ.IVQASV.R........KVYHEK.P.ALIITVS B1M2L8_METRJ/10-141 PGAPRG....KGRHRAQL.....VHR..GGVARIHSHPDQK.....TEAYESALRLAAGAVM.RG.RALLT.......GPLE..VRIFATMPIPASW..SKRKRLDAIERRLRP...........TTKPDWDNIAK.VSDAL..........NHVVWADDAS.VVDGLV.R........KFYGET.P.ELVIQVT G8AQL3_AZOBR/13-141 .GPVVG....KGRPKFAR.....LPG.....GGVTTRTPEK.....TRRYESEVKSEAQRAM.SG.RPLVH.......GPVR..VDICVTCLAPDGW..AAWKSSAALRGAVRP...........TTKPDLDNVLKGVLDAL..........NGVVWKDDVQ.AVSVSI.S........KFYDTK.P.GLSVEIY D4MWK7_ANAHA/9-139 PGAPKG....KARAKTVR.....SKK.....GGTFSYTPEG.....TMLYENLIKCCYRQESNNI.IFNDG.......QPLK..VTIIAYYPIVKST..SKKKKQQMLEDLMFP...........TKKPDIDNIAKSILDAL..........NKLAYRDDTQ.VVTLHM.E........KHYAED.P.RVEVEIE R6IXV1_9CLOT/8-137 PGEPQG....KGRHRAVR.....RGD......HIATYTPRK.....TKDYEDEVQFCYRQAYGDRMAFAVD.......EPIS..ATIIAAFGIPKST..SKRRKVEMMAGMVFP...........TKKPDTDNIAKIVLDAL..........NGLAYPDDKQ.VVDLQV.F........KTYDLE.G.YVEVEL. F2JK68_CELLD/8-135 PGEPKG....KARPRIYS.....QGG......KSHAMTPQD.....TLSYESLVKWVFTNTM..E.ARKLQ.......GEIE..AKIVAMYPIPKSM..TKKNRQLIDEGKLHP...........TKKPDLDNVAKIILDSL..........NKVAFDDDSQ.VTRLIV.E........KHFSDN.P.RVEVTLT R6ZAS0_9CLOT/7-129 .GKPTG....KGRPRLGK.....YGT..........YTPQK.....TRDYEDLVKLSFKNKY..K.VKPSE.......REIK..MKITAVFEPPRRL..SKKKRAELIDWEQGY...........MHKPDIDNIAKIILDAL..........NGLAYKDDNQ.VTTLLL.F........KQYGTA.D.KVVVELD R7GJW3_9CLOT/7-133 PGKITG....KARPRVNT.....LTG........RAYTPGN.....TKDYEMLIKQYFKVKY.PR.YETLE.......GRII..IKIEAYFEPPKST..SKKQTEQMLENKISP...........TKKPDIDNIIKIVLDAL..........NKMAFRDDSQ.VTKIEV.E........KIYGPV.E.KIKVKID R7FJ42_9CLOT/8-134 PGKVIG....KGRPRLNS.....YTG........VVYTPTR.....TKDYEALVEQYFLLKY.PR.FKALE.......GRIK..VNIIAYFSIPKTT..KKSDINEMLENNISP...........TKKPDIDNIVKAILDSM..........NKFAFKDDNQ.ITKLEV.E........KKYAIE.D.KVYVKIE R5XN19_9CLOT/8-134 PGKIIG....KGRPRLNS.....YTG........AVYTPTR.....TKDYENLVMQYFMIKY.PK.FKQLE.......GRVS..VEIVANFEVPKST..KKQDKILMLENKINP...........IKKPDIDNIVKIILDAM..........NEIAFKDDTQ.ITKLNV.E........KKYSET.E.SVFVKIE R5PTC9_9CLOT/8-134 PGKVVG....KERPRVNM.....YTG........RVYTPNK.....TKEYETLIQQYFKISY.PM.AEMLE.......GRVH..IDIIAYLKIPKGT..SKAKTTQMLEGNMSP...........TQKPDVDNIAKSVLDAM..........NKVAFKDDNQ.VTKISV.E........KRFSQE.E.KVEIRIE R5N6Y4_9CLOT/10-134 ..TIVG....KQRPRVNT.....YTN........QVYTPNR.....TKDYELLVQQSFKIKY.PR.HDMIN.......GRVA..VEITAYMKIPKST..SKNLIDDMLAGNISP...........TKKPDVDNIAKSILDAM..........NQYVFKDDNQ.VSKVTV.E........KKYGEI.E.KVHIKVE R6BJ44_9CLOT/8-134 PGEIVG....KERPRVNM.....YTG........RVYTPGK.....TKDYEFLVQQYFKMKY.PR.YEMLE.......GRLS..INIIAYLKIPKST..SKAKVEEMLENKISP...........TKKPDVDNIAKSILDAM..........NNFVFKDDNQ.VSKISV.E........KRFALE.E.KAVIEVE C4ZCC2_AGARV/13-142 PGQPFG....KQRPKFSR.....AGA......YVKTYTPKE.....TTSYENLVKLFYNEAAKGK.MFPEG.......AMLD..VRIIAYYEIPKST..SKKKRREMLEHRIRP...........TKKPDWDNIGKIVCDSL..........NLVAYHDDSA.VVDAQV.R........KFYSET.P.RIDVMIK R6JDN2_9CLOT/8-142 .GEPKA....KGRPRVSV.....RKSGDGEKTFARAYTPKA.....TVVYENQVKIEYENQCGSF.RFSDD.......AMLD..VRIFAFYGIPKST..SKKKRQMMIEGKIRP...........VKKPDFDNIAKIICDSL..........NGIAYRDDAM.VVDGMF.R........KYYSEQ.P.RVEVSIR D4N1J6_ANAHA/10-136 .GEPTG....KGRPRFNT.....QSG........RAYTPKK.....TVNYETWVKMEYCRQCSDY.KFPDD.......AMIE..MEITAYYQIAKSD..SKKKKQMKLDNMIRP...........TKKPDMDNIVKIIADPL..........NGIAYHDDSQ.IVNCSI.K........KFFSDQ.P.RVEVKIR A5I2H9_CLOBH/6-131 DGKPMG....KQRPRFNS.....KTG........NTYTPDK.....TVNYENWVKLCYQQQCKGE...KLT.......GEVV..AFINAYYVIPKST..SKKNKKDMLAGIIRP...........TIKPDVDNIAKVILDSL..........NGLAYKDDKQ.IVFCAI.S........KWYGEN.P.RVEVILE Q18AD1_PEPD6/8-132 DGEPVG....KERPRFNL.....ATK........RTYTPNK.....TKSYEELIKWLYQSKV....KYRFT.......GYIK..MTIRCYYSIAKSN..SKKVKEQKRNNVLRP...........SKKPDIDNVIKVVADSL..........NGIAYKDDTQ.IVEVVA.S........KYYSDK.P.RVEVMIE Q65KQ9_BACLD/7-130 PVEPMGAVRMTGRGKFVN.....KNA.............QR.....YLAYKDFIKLHAQKQM.KG.QQLYT.......GPTV..VKVLFSMPIPKSW..SKKKQQEAISTVH.............IKKPDIDNLVKGVFDAL..........NKTAWHDDNQ.VFMVIG.A........KVYGKE.P.GIEVQIM F3YCQ5_MELPT/160-289 PFNPVA....TPRPGVKR.....TKT......GILTYYPKK.....YQDYKTAMKTYIEDQEMYN.QDFFQ....VIQSSFGMIAEIDYFCQMAKNQ..RKLEKLMK..................VTAPDIDNLVKGTLDSI.........FHYGLPIKDSR.VVGLIA.Y........KFNTLKNP.HTEVRIR F3YCQ5_MELPT/7-135 PFNPVA....TPRPSIKR.....TKT......GILTYYTEK.....YATYLEEVSNYLSDHQLIN.DDFYQ....TIACEMGVVMEVDFFIQRAKNQ..KKVNTILR..................TYAPDIDNLLKGAMDCI..........FNQSKIKDSC.VVGVIA.F........KYNTINNA.RTEIRLR Q9CGS2_LACLA/11-127 ...PTT....QQQKGIKK.....VKG......KLQFYDRRG.....TNNYS..LKAQLMKNKPKE.CFEKN.......VPLK..LSVTFFYAIKQKKRWWQWK......................TSRPDLDNLMKNLQDYM.........TKLRYYSDDSQ.IVWLEA..........KKVNDEKN.RIEIEIT R7GWU0_9FIRM/8-128 MEPPTS....THQQQGHT.....VDQ....RGVHRFYKRGN......GETEAKLAAHLRKHIP...EQPYT.......SAVQ..LVVKWCFPLKAKHTDGEPY......................TNKPDVDNLCKALFDIM.........TKLGYWKDDKQ.IYSAVV.E........KFWANV.P.GVYVRIE Q9A0P9_STRP1/12-129 ...PTT....THQQKKVT.....VIN.....GKPHFYEPES.....LKNARDKFTSLLAQHVP...PSKLD.......GPIR..LTVKWLFPKIKGSTNGQYK......................TTKPDTDNLQKLLKDCM.........TELGFWNDDAQ.VASEII.E........KFWADT.V.GIYVKVE R6CHZ9_9FIRM/8-130 MEPPTV....THQEHKVS.....VVN.....GKPVFYDPPE.....LKRARQKIIGHLCKYKPVD.MEPYQ.......EGVR..LVTKWCFAQGEKHKDGEYR......................ITKPDTDNLQKLLKDCM.........TTVGFWEDDAL.VASEIA.E........KFWARI.P.GIYIRIE R5GVZ7_9FIRM/45-162 ..PPTV....TAQEHKVT.....IRN.....GKPVFYDPPE.....LKEARAKLTAHLAQHKP...EKPYT.......CGVR..LITAWCFP.GEGHADGEWR......................TTKPDTDNLQKLLKDCM.........TAVGFWKDDAL.VASELC.E........KFWAQV.P.GIFIRIE F0SXE8_SYNGF/13-128 ...PTA....THQEKKVN.....WET.......RTFYEPDN.....VKAARIKIRAHLAKHVP...EKKYT.......GPVR..LLTKWCFLVTGKHKNGEYR......................TSRPDTDNLQKMLKDVM.........TTLDYWTDDAL.VASEII.E........KFWADI.P.GIYIAIE B8I135_CLOCE/16-133 ...PTV....THQEKQVK.....VVN.....GKPVFYEPDK.....LKAARAKLQAHLAKYVP...DKPYT.......GPVR..LMVKWCFPVTGKHKNGEYK......................TSKPDTDNLQKLLKDVM.........TDLRFWKDDAL.VASEIV.E........KFWAEV.P.GIFIAIE R5KJ66_9CLOT/12-130 ...PTV....TAQEHRVG.....ISK....SGKPYFYDSAE.....IKAAKVKFRDYLAAYVP...KQQYT.......GPVR..LMVKWLFPITGNHHDGEYK......................TSKPDTDNLQKILKDLL.........TALHFWKDDVL.VVSEIV.E........KFYADQ.P.GLFICIQ D9R8Z8_CLOSW/13-130 ...PTV....THQEKQVH.....VVN.....GKPVFYEPDE.....LKAARAKLSAHLGQHVP...EKRFV.......GPVR..LTTWWCFPVTGKHKNGEYK......................TSKPDTDNLVKLLKDVM.........TELHFWKDDAQ.VASEVI.E........KYWADL.P.GIYVKVE Q8E0Z6_STRA5/10-154 PIEPKP....QTRPKFSK.....FGT..........YEDPK.....MKRWRKEVSGWIEKNY..D.GPFFD.......DCIK..VEVTFYMKAPKTL..SKEPTQRSKGKTIQIYQNFVRELIWHAKKPDIDNLIKAVFDSISDAGYDRIQKSGIVWSDDNI.VCDLRA.K........KKYSQN.P.RIKVRIE Q832U0_ENTFA/6-135 PITPKP....QSRPRFAR.....RGK......YVQAYEDST.....MKTYKQQVKNYLRRAK..P.KLIEK.......GPIM..AHVTFYVQAPKSALSNKQKRLDVKLERKYC...........DKKPDLDNYFKAVTDAA..........EGILYKNDGQ.IAVIVC.Q........KLYSLR.P.RTELEIM F9ULN6_LACPL/10-134 PVQ.......QQRPRATH.....YGR......SIRLYDPKA.....VKQFKQAIAEEAMLTYR...HQPLS.......GSLA..VALVFYRPVQQSL..SKVEKQRRIDGKHLP...........VVKPDLDNYIKSFLDAL..........HSIYWQDDAL.ITDIVA..........SKRYGRQP.RIEIEVK Q03FF0_PEDPA/7-134 PSEPIA....QGRPRFVS.....RGK......FVSTYDPPK.....SKAYKELVAQYAREQY..H.GKLLE.......GQLY..VVLNVFRSVQKSI..SKAERARRLSGVHRP...........TVKPDIDNYFKAVTDAC..........TGIIWRDDAL.ITDVKM.G........KFYSEE.P.RVEIYVE Q03G49_PEDPA/7-133 AGEPVP....QGRPRFSG.....RGG......FVRSYDPPK.....SKEYKKHVKEEVQQQY..H.GKPLE.......GQLL..VELSVYRPIQKSI..SKKERDMRLLGFHRP...........IVKGDIDNYFKAVTDAC..........TGLLWVDDAQ.IVSTKT.N........KYYSEN.P.HVEMLV. F3YBI3_MELPT/10-137 PGQPVP....QGRPRFAR.....RGN......FVQTYDPQQ.....SVDYKKLVKEVAELNK..P.ESLLE.......GALS..VEIQIYKQSLKSF..SKLKRDLFERKELRP...........ITKPDIDNYAKGILDAF..........KGVIWVDDGQ.VVRLVC.D........KFYSVS.P.RAEISIK YQAN_BACSU/10-138 .GEPVA....QGRPRGSI.....RNG......KVHMRDPAK.....SKYFKQYVALVASQHR..P.ETIIT.......GPVS..MDVKVYRPMPKSVSNSKKKKEKAEKGLLRP...........TTKPDVDNYVKGVKDAL..........NHLIYKDDSQ.VVDLKV.S........KFYSEE.P.RVEVMIR Q5WE30_BACSK/10-138 DGEVQA....QGRPRAGK.....TKY.....GKTIMYDPPT.....SRNYKQYVKLVASQHK..P.ETPYE.......GEIE..LFVTVYRQIPKSM..PKWRQELARAGKLRP...........VTKPDCTNYVKGIEDGL..........TGIIWKDDNQ.ITKLTV.E........KLYSDS.P.RAEIKVI C9LU68_SELS3/11-137 ..DPVA....QGRPRFSR.....QGG......FVKAYDPAK.....SRDYKSYVRMIAAQHA..P.VTPVE.......GAIE..FSLRIYRAIPKGM..PKYKREAAKEGRLRP...........VTKPDVSNVLKGVEDAL..........KGVWYKDDSQ.IVGYGVLG........KWYDER.P.RIEIMMR K9TQU7_9CYAN/212-322 PGSVTP....KARPRVTS.....NGT..........FLPKR.....YREWRLRAEGEIIMQVNQM.NPLPQ.......LPIER.ASVRIILRGKH..............................R..GDGDNAIGSVCDAL.........VGAGIFSADSL........KQIPFGSWRHIPDGE.T.GVKIQIE Q119T1_TRIEI/152-267 PGKIVP....KARPRVTA.....NGT..........YLPSR.....YRIWRNQAEVEIYRQVSKL.NLEVS.......LPIQR.AAISISFCGKH..............................RTNSDLDNLAGACLDAL.......TLNGAGVLQDDRL........SCIPKLNIEYIPHIKKI.GVWIEIK D4ZMR6_ARTPN/161-274 ..AVVP....KARPRVTS.....NGT..........YLPPR.....YREWRNRAEVELYRQISER.NLTNR.......FPIRR.AAVTIRLFGNH..............................RTNSDIDNLAGACLDAL.......TLQGAGVLMDDRL........SCLPQLRVEFIPDLPKT.GVWIDIE E3PXQ4_ACESD/7-120 PGRPIS....KSNFKLSN.....KSG........QAWLPHKGKYSKYAAYENYIAGIINQEYF...GPPLE.......ENLI..TILKLYFPN................................KRMGDIHNYPKSICDGI.........EKSGIILNDKQ.LKPFLIL.........DYIDKDNP.RVEIELY R5XLU7_9CLOT/7-120 PGRPIS....KSNFKLHN.....IHG........QAWMPAKGKHSKYLAYENMIAGYINQQYQ...GEQIE.......EDLI..TVLKLYFPD................................KRMGDLHNYPKSICDGI.........EKSGIIKNDKQ.LKPVLLF.........NYIDKEEP.RVEIFLY A6TU92_ALKMQ/7-120 PGRPVS....KSNFKLTH.....KNG........QVWMPKSGKHSRYVAYENMIAGYINQQYA...GPQLT.......QQLI..TILRLYFPD................................RRMGDLHNYPKSICDGI.........EKSGIISNDKQ.LRPVLLF.........DFIDSENP.RVEIELY B4U8U8_HYDS0/13-123 ..PPKG....KANRYIRQ.....KGG........AVFKPWK.....ISSWETKASWEISLQLK...KLKFK.......EPFSCKVSVEAIIFLPD..............................KRRRDIDNMLKTLWDVL.........EKNDVIKNDNL.IYEINT..........IKHVEKGLQGIFIKIK C8WWQ1_ALIAD/7-122 PLPP......SVNHAYRTYVHPQTGQ.......RIRVLTSK.....AQKFRRDAAYLALRWRQETGWTMPQ.......PGTK..VVLRLWYFWPS..............................RRRMDTHNREKVLLDAL..........EGVLYPEDRWVLIQEMD..........FEVDRKRP.RLEIEV. A9B184_HERA2/8-122 PLPP......SINSQYVT.....VGN........RRVLSRE.....AQAFKRQVKRQLALLQQRD.TISEQFLALAHQGYIA..LFLDFYFETPL................................RRDLDGGLKITQDSI..........CTSLGINDNR.VVDIHLVK........RIDPLH.P.RLEVELE C5A7W3_BURGB/7-133 PYPI......SANRYWRPVKLGPRIS.........IVPTKE.....AKAYKADVGQILRAAG....VKPIS.......GRVR..VHIDLYPQRPQDW..QKRQRLHGAQWDNT............VRCLDIDNARKVVYDAL..........NDVAFDDDGW.IWSDSA.TRRE.....PDGEA....RVVVTIT G8MEU2_9BURK/7-134 PYPV......SANRYWRV.....RVV....KGVAMNYVSSE.....AKAYKEQVGWIVRAAGV...GAPLA.......GRIA..IDYTLYPKRPQDW..QRRARKLGDAWHDN............VMCLDLDNAQKVLLDAL..........KGVAFDDDKW.VRRITA.ERAE.....PDGEA....RIVVRIA B2U8I2_RALPJ/9-142 PYPI......SANRYWASRIVKPKSG....PSFVSTYVTPE.....AKAYKEQVAWLAKSAGV...REPLA.......CRVQ..IDYTLYPKRPQDW..ERRVAKDPLQWDNT............VQCIDLDNAQKVLLDAL..........KGVVIQDDGWQVRRIHA.ERGV.....PDGEA....RIVVTVT C6XEA8_METGS/7-139 PYPI......SANRYWAHRIVRPKGG....KPMALTYITPE.....AKSYKQQVAWHCKAAGI...LEPIA.......GRVH..IDIKLYPKRPLDW..AKRAAKNPEGWDDD............VMCLDLDNVNKVLLDSL..........KDVAIQDDKW.VRKITA.ERME.....PDGEA....RLVVTIR W0E1N2_MARPU/4-115 PYPP......SANRMWRH.....VRG........RVVPSAD.....AERWQREAAWRAQAAGVRSTSSDVA.............VALVLHPRLTAKG..RPS.......................RQRLDLDNIIKPTLDAL..........QGTAYDNDRQ.VVRIGA..........EVGEGLPGGGLTVRIE F9ZNV1_ACICS/7-129 PYPP......STNRIWRT.....AGG........KTYLPAK.....VADYKRRAAWVAKMAMRD..RPPLT.......GPVA..VRIVLHPVLPKDA..EKRRQIWGDYWHLE............LRCIDLANAEKAAVDAL..........QGVAFEDDKQ.IVRMVL.ERGQ.....PVSEG....AVFVE.. Q32GH7_SHIDS/8-114 PYPP......TVNTYWRR.....RGS........TYFISEE.....GKRYRRAVALIVRQQRL...KLSLS.......GRLA..IKVIAEPPD................................KRRRDLDNILKAPLDAL.........THAGVLMDDEQ.FDEINI.VRGQ.....PVSGG....RLGVKIY RUSA_ECOLI/9-115 PWPP......SNNRYYRH.....NRG........RTHVSAE.....GQAYRDNVARIIKNAML...DIGLA.......MPVK..IRIECHMPD................................RRRRDLDNLQKAAFDAL.........TKAGFWLDDAQ.VVDYRV.VKMP.....VTKGG....RLELTIT #=GR RUSA_ECOLI/9-115 SS E---......-HHHHEEE.....SSS........SEEE-HH.....HHHHHHHHHHHHHHTT-...TT-B-.......S-EE..EEEEEE-SS................................SS---HHHHHHHHHHHH.........HHTTSBS-GGG.EEEEEE.EEE-.....--TT-....EEEEEEE D3UXF5_XENBS/9-115 PWPP......SNNTYWRH.....TKR........SHYISEK.....GITYRQQISNIIQQQNL...NISTQ.......SRIK..ISITANPPD................................RRQRDLDNLPKAVFDSL.........TYANFWVDDGQ.IDDMRI.RRGE.....RVSGG....YLDVQIW Q2NTR8_SODGM/6-119 PFPP......SVNGYWRAPNRGKLAG........RHLVSER.....GRKYRAEAVAEILEQLRGM.PQPVT.......GDLA..VSVTLCPPS................................RAKRDLDNYFKALFDSV.........TNAGIWIDDSQ.IKKLEA.EWGP.....VTKGG....RVYLSIV G2KMX7_MICAA/7-112 PIPP......SVNAAYRA.....VNG........RVIKSAR.....YRAWSAEAEQALKSQ.IET.IAPMT.......GRLI..VHYGFGFPD................................KRRRDIANFEKALSDFL.........EESGVYLNDCQ.IDDMRM.T........RLNTGN...GVYVTIK Q8HAN7_BPB78/13-125 PFPP......SLNRAYRA.....AAG........RVLLSKP.....ARQYAVAVRNALPPGR....PERIE.......GRLF..VAIELWPPAKLA.............................NKAWDVANREKLICDAL.........TKAGFWRDDSQ.IDSISI.MRWPYAETSPLGAA....RVTVTI. E8QXG8_ISOPI/7-112 PFPP......SLNHYYRH.....LGH........VTLISRR.....GRAYREAVMALLAAQK....IEPMS.......GPLD..LAVELFPPD................................RRKRDADNFHKCLSDAL.........QHAGVFHDDSQ.VVRLEI.SKHE.....PVKGG....KVVVRIQ R5L6J7_9CLOT/10-128 P..P......SVNHYLGY.....RAIIKDGKPLAVSYVTPE.....TIRYKSKLREYIAEEVEKQ.HWTLK...PNKTQHFY..VDTVFYFDRVD.................................RDSNNYFKVLLDAI........TETKLIWMDDNVALERVNR..........IYYDAKNP.RIELTIR B7S400_PHATC/21-150 EGKPIP....MPRPRLGR................GIWFNPA.....TRQLKEFSKKLQALLPEDG.VVFPR......GECLE..VNLFFYIRRPNSDYDGNKRINALKPGRANPF.........ETVKPDIDNLAKFTLDAM..........QGIVFHDDSQ.VVKLLV.Y........KLRGNE.G.GTRIKVR B9EBL2_MACCJ/18-137 ..KPMP....SPRPRFRK.....AGK......FIQTYMPAS.....YMKHKEYIQKQMPKLL.......IE.......DPVK..LEIYFFIPMAKSW..TKKKRTLLLDKPH.............HIKPDIDNLLKTVMDAA..........NNHVWNDDGQ.VYEIVT.R........KIFSQE.A.KIIIKVI E6WYD1_NITSE/11-127 ..VPVP....APRPRVTK.....SGA..........YMPES.....YRNFKRIIGYLARRQL....KAPFT.......GAVK..MNILFQFKKPKSW..SKAKRKRAFWH...............TQKPDKDNLEKSIKDAL..........EGIAYRNDSA.VASGSI.H........KVWGDC.N.RIVVELE D5CT73_SIDLE/9-137 PGTPVG....KGRPKFAR.....RGK......FVTTYTPEK.....TASYENLVKLAAAKAM.DG.RQPID.......GAAQ..VSIWLWVTPPASW..SQKKQRQALAHEIFP...........TTKPDMDNVVKGIFDAM..........NEIVWQDDKQ.VIDLSC.Y........KRYSET.A.RAEVKIT G8QMM9_AZOOP/13-141 PGAPVG....KGRPKFAR.....RGS......FTVAYTPEK.....TASYENLVKVKAEQAM.AG.RPVIE.......GAVS..VVIWLYVTPPASW..SQKKQRAALEGAILP...........TSKPDVDNVVKGIFDAC..........NDIVWRDDKQ.ACDVVV.K........KRYSDT.A.RATVQVR A9I8Y2_BORPD/36-164 PGVPVG....KGRPRAAK.....FGK......HIQLYTPEK.....TITYESTVVLTGYQAM.AG.RPPLD.......GPVS..AMLTIRLPVPTSW..PKRKQAAALAGVELP...........TKKPDADNVVKAIFDAF..........NGVVWNDDTQ.VVDMVV.R........KRYAAV.P.GVAVRIA C1D8H9_LARHH/9-138 PGTPVG....KGRPKVST.....RGG.....KFARMYTPEK.....TASYEGLIALSARQAM.GG.RPLID.......GPVD..VSLMIRLAVPASW..SKKKQAAALAGQVLP...........TKKPDADNVLKAVFDGM..........NGVVWVDDVQ.ACGVML.R........KRYAQT.P.GVTVVVR B2JU78_PARP8/29-151 EGVPVG....KARARVTR.....NGT..........YTPKK.....TRRYEHDVRTVAMQAM.GA.LRPCR.......DAVH..VSLVVFLPVPERF..SKAKRAAALAGLVYP...........VVRPDLDNFEKAVTDAL..........NGVVYHDDSQ.ICDVVK.S........KRYSDR.P.RVVIE.. Q2W5Y8_MAGSA/8-131 PGEVTG....KGRPRIWN.....GRA..........VTPAK.....TRSKEGVIASLAMDAM.GG.CDPLT.......GPVL..VTIEAVLPVATSW..SKKRRAAALDGTEQP...........TKKPDLDNVVKLVLDAV..........NGIVFADDAQ.ITHIIA.S........KRYGVF.A.QTTLTV. W0P8I5_9BURK/11-139 PGAAVP....KARARVVK.....VKG......RTMAFTPEK.....TVNFENLVSWTAKQAM.QG.RDMWM.......GPVK..ATIEVILPIPTSW..SGKRKMEAAADHIAP...........TKKPDADNIQKALFDAM..........NDIVFKDDSQ.VVDIHC.W........KRYGLT.P.ETRIRIE Q2G3Y0_NOVAD/9-131 PGVPVG....KGRPRFVK.....ATG........RAYTPEK.....TASYESLIAYAASQAM.RG.AQPIN.......APIG..IKVQAVFPIPASW..TKKRKESAVWH...............TSKPDGDNILKALGDAL..........NGIVWADDSQ.VARTSI.A........KVYGDV.P.GLHVFVE J9Z9U5_LEPFM/8-131 .GTPIP....KGRPRMTR.....TGH.........AYTPQK.....TRTYESKLAFFGSREM.TG.KPPLE.......CPLQ..VDLMVVLPIPESW..SRKKKAEALACKILP...........TGRKDLDNFVK.ILDGL..........NGIVWKDDGQ.ICALSA.R........KVYGEI.P.GLHIVIE #=GC SS_cons E---......-HHHHEEE.....SSS........SEEE-HH.....HHHHHHHHHHHHHHTT-...TT-B-.......S-EE..EEEEEE-SS................................SS---HHHHHHHHHHHH.........HHTTSBS-GGG.EEEEEE.EEE-.....--TT-....EEEEEEE #=GC seq_cons Ph.Phs....psRs+hsp.....tss........thYsPpc.....scsYcphlphhhppph....tt.hp.......uslp..lplphhhshspsh..schp......................spKPDlDNlhKslhDul..........sshsapDDsQ.lsplhs.p........Khautp.s.+ltlplp //