Summary: Monogalactosyldiacylglycerol (MGDG) synthase
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Monogalactosyldiacylglycerol (MGDG) synthase Provide feedback
This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase ( EC:220.127.116.11). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B .
Awai K, Marechal E, Block MA, Brun D, Masuda T, Shimada H, Takamiya K, Ohta H, Joyard J; , Proc Natl Acad Sci U S A 2001;98:10960-10965.: Two types of MGDG synthase genes, found widely in both 16:3 and 18:3 plants, differentially mediate galactolipid syntheses in photosynthetic and nonphotosynthetic tissues in Arabidopsis thaliana. PUBMED:11553816 EPMC:11553816
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR009695
This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [PUBMED:11553816].
|Molecular function||transferase activity, transferring hexosyl groups (GO:0016758)|
|Biological process||glycolipid biosynthetic process (GO:0009247)|
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This is the GT-B clan that contains diverse glycosyltransferases that possess a Rossmann like fold .
The clan contains the following 35 members:Alg14 Capsule_synth DUF1205 DUF1972 DUF3492 DUF354 Epimerase_2 Glyco_tran_28_C Glyco_trans_1_2 Glyco_trans_1_3 Glyco_trans_1_4 Glyco_trans_4_2 Glyco_trans_4_3 Glyco_trans_4_4 Glyco_transf_20 Glyco_transf_28 Glyco_transf_4 Glyco_transf_41 Glyco_transf_5 Glyco_transf_56 Glyco_transf_9 Glyco_transf_90 Glycogen_syn Glycos_transf_1 Glycos_transf_N Glyphos_transf LpxB MGDG_synth Mito_fiss_Elm1 Phosphorylase PIGA PS_pyruv_trans SUA5 Sucrose_synth UDPGT
We make a range of alignments for each Pfam-A family:
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Curation and family details
|Seed source:||Pfam-B_8075 (release 10.0)|
|Author:||Vella Briffa B|
|Number in seed:||12|
|Number in full:||972|
|Average length of the domain:||160.40 aa|
|Average identity of full alignment:||26 %|
|Average coverage of the sequence by the domain:||40.98 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||6|
|Download:||download the raw HMM for this family|
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