Summary: Special lobe-specific silk protein SSP160
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Special lobe-specific silk protein SSP160 Provide feedback
This family consists of several special lobe-specific silk protein SSP160 sequences which appear to be specific to Chironomus (Midge) species [1,2].
Hoffman RT, Schmidt ER, Case ST; , J Biol Chem 1996;271:9809-9815.: A cell-specific glycosylated silk protein from Chironomus thummi salivary glands. Cloning, chromosomal localization, and characterization of cDNA. PUBMED:8621663 EPMC:8621663
Berezikov E, Blinov AG, Scherbik S, Cox CK, Case ST; , Gene 1998;223:347-354.: Structure and polymorphism of the Chironomus thummi gene encoding special lobe-specific silk protein, ssp160. PUBMED:9858763 EPMC:9858763
Internal database links
|SCOOP:||Kei1 DUF1980 DUF2217 Apt1 FSA_C DUF3439 SpoIIIAH Shisa AJAP1_PANP_C|
External database links
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Curation and family details
|Seed source:||Pfam-B_14947 (release 10.0)|
|Number in seed:||2|
|Number in full:||6|
|Average length of the domain:||546.20 aa|
|Average identity of full alignment:||49 %|
|Average coverage of the sequence by the domain:||71.53 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||7|
|Download:||download the raw HMM for this family|
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