Summary: Wound-induced protein WI12
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Wound-induced protein WI12 Provide feedback
This family consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Q9XES3). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development . This family seems partly related to the NTF2-like superfamily.
Yen SK, Chung MC, Chen PC, Yen HE; , Plant Physiol 2001;127:517-528.: Environmental and developmental regulation of the wound-induced cell wall protein WI12 in the halophyte ice plant. PUBMED:11598226 EPMC:11598226
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR009798
This entry consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Common ice plant) (SWISSPROT). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [PUBMED:11598226].
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This superfamily contains a variety of enzymes such as Scytalone dehydratase, Delta-5-3-ketosteroid isomerase, Limonene-1,2-epoxide hydrolase among others. The family also includes presumed non-enzymatic homologues such as NTF2.
The clan contains the following 27 members:CaMKII_AD DUF1348 DUF2358 DUF3225 DUF3804 DUF3828 DUF3887 DUF4440 DUF4467 DUF4864 DUF4878 LEH Lumazine_bd_2 MBA1 MecA_N Mtr2 NTF2 PHZA_PHZB Ring_hydroxyl_B Scytalone_dh SnoaL SnoaL_2 SnoaL_3 SnoaL_4 Tim44 VirB8 WI12
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Curation and family details
|Seed source:||Pfam-B_15477 (release 10.0)|
|Number in seed:||5|
|Number in full:||145|
|Average length of the domain:||105.00 aa|
|Average identity of full alignment:||46 %|
|Average coverage of the sequence by the domain:||63.19 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||7|
|Download:||download the raw HMM for this family|
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