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SRR1 proteins are signalling proteins involved in regulating the circadian clock in .
Staiger D, Allenbach L, Salathia N, Fiechter V, Davis SJ, Millar AJ, Chory J, Fankhauser C; , Genes Dev 2003;17:256-268.: The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function. PUBMED:12533513 EPMC:12533513
This tab holds annotation information from the InterPro database.
InterPro entry IPR012942
This entry represents a domain found in the plant Sensitivity To Red Light Reduced proteins (SRR1) and yeast SRR1-like protein Ber1.
SRR1 are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function. In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [PUBMED:12533513].
Ber1 is involved in microtubule stability in yeast [PUBMED:18064466].
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This example describes an architecture with one
Gladomain, followed by two consecutive
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Curation and family details
|Seed source:||Pfam-B_29119 (release 16.0)|
|Author:||Wood V, Mistry J|
|Number in seed:||185|
|Number in full:||475|
|Average length of the domain:||59.20 aa|
|Average identity of full alignment:||27 %|
|Average coverage of the sequence by the domain:||18.47 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||9|
|Download:||download the raw HMM for this family|
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