# STOCKHOLM 1.0
#=GF ID DegQ
#=GF AC PF08181.13
#=GF DE DegQ (SacQ) family
#=GF AU Lee SC;0000-0002-0504-0859
#=GF GA 22.0 22.0
#=GF NC 21.9 21.9
#=GF TC 22.3 23.1
#=GF SE Short protein clustering
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Family
#=GF RN [1]
#=GF RM 1688843
#=GF RT Signal transduction pathway controlling synthesis of a class of
#=GF RT degradative enzymes in Bacillus subtilis: expression of the
#=GF RT regulatory genes and analysis of mutations in degS and degU. 
#=GF RA Msadek T, Kunst F, Henner D, Klier A, Rapoport G, Dedonder R; 
#=GF RL J Bacteriol 1990;172:824-834.
#=GF DR INTERPRO; IPR012554;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC This family consists of the DegQ (formerly sacQ) regulatory
#=GF CC peptides. The DegQ family of peptides control the rates of
#=GF CC synthesis of a class of both secreted and intracellular
#=GF CC degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids
#=GF CC long and activates the synthesis of degradative enzymes.  The
#=GF CC expression of this peptide was shown to be subjected both to
#=GF CC catabolite repression and DegS-DegU-mediated control. Thus
#=GF CC allowing an increase in the rate of synthesis of degQ under
#=GF CC conditions of nitrogen starvation [1].
#=GF SQ 31
A8FGX9.1/1-46      MEKYEIEELKQLLWKLENEIRETTASLHNINKSIDQYDKYEY.VKIS
A0A2V2HIA3.1/1-46  MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYTY.LKTS
M5NYP8.1/1-46      MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYTY.LKTS
P69889.1/1-46      MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYTY.LKTS
A0A1C3SIZ8.1/1-46  MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYSY.LKTS
A0A1R1QE59.1/1-46  MKKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKYTY.LKTS
Q99039.1/1-46      MEK-KLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYaMKIS
A0A0H3E5P9.1/1-47  MEKKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKFTYaMKIS
A7Z885.1/1-46      MEN-KLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYaMKIS
A0A0M4FRX5.1/1-46  MNQYNIEELKQLLSKLETDIKETNNSLRMINKSIDKYDKYAY.VKIS
A0A176J396.1/1-46  MTQHKIEELTQILHQLEKEIRETKQSLQSINKSIDKYDKYAY.VKVS
A0A3G6UT03.1/1-46  MTQHKIEELTQILHQLEKEIRETKQSLQSINKSIDKYDKYAY.VKVS
A0A2N5FET5.1/1-46  MKKHNIEEITQLLKRLEKEIQETKQSLRSINKSIDKYDKYSF.INVS
A0A179T1Z2.1/1-46  MDQQKIEEMTKLLLKLEQEIKETKESLHSINKSIDKYDKYAF.LNVS
A0A268E1V7.1/1-46  MDQQKIEEITEMLLKLEKEINETKASLQNINKSIDKYDKYAY.LNVS
A0A084GKF2.1/1-46  MKKHNIEEITQLLKRLEKEIQETKQSLRMINKSIDKYDKYSF.INVS
A0A0M2PIS1.1/1-46  MDLRKIEEMAQMLVQLEEEIKETIESLHLINKSIDKYDKYTY.LNVS
A0A0M2PHS6.1/1-46  MDQQKIEEMTKLLLKLEQEIKETKESLHSINKSIDKYDKYAV.LNVS
A0A1S1FVA2.1/1-46  MKKHNIEEITQLLKRLEKEIQETKQSLRSINKSIDKYEKYSF.INVS
A0A0M2PH73.1/1-46  MDLRKIEEMVQMLVQLVEEIKETIESLHLINKSIDKYDKYTY.LNVS
A0A4S4C0Q9.1/1-46  MDQQKIDEMTELLIKIEQDIKETKESLRCINRSIDKYDKYAI.LNVS
A0A327RR53.1/19-64 MDQQKIDELTQQLIELEQELKETKESLHLINKSIDKYDKYAF.LNVS
A0A2C1KUR4.1/1-46  MNQQKIDEMTQLLLKIEQELKESKESLQLINKSIDKYDKFAF.LNVS
A0A327RSU4.1/1-45  MDLRKIEEMTKMLVELEEKIKETKKSLCLINKSIDKYDKYRF.LKV-
A0A1L3MNF8.1/1-46  MDQQKIEEMTQKLLQIEKELRETKQSLLSINKSIDKYDKYSI.INVS
A0A163ZQU7.1/1-45  MNHQEIEKINKIFLMLERELDETKKALDNINKSIDKYDKYQY.TKI-
A0A2N6RRA5.1/1-46  MNQKKIDEMTELLLRIEKELKESKQSLELLNKSIDKYDKYAF.LNVS
A0A0M2PAX0.1/1-46  MDLREIDKMIQMLERIEKEIQETKKSLHLIINTIDKYDKFAY.LKIS
A0A0M2PIR0.1/1-46  MDLREIDKMIQMLERIEKEIQETKKSLHLILNTIDKYDKFAY.LKIS
A0A0M2PN08.1/1-46  MDLREIDKMIQMLERIEKEIQETKKSLHLILNTIDKYDKFAY.LKVS
A0A1Y1UYB5.1/28-47 ---------------------------RKVNKSIDFFDKYKYcLKCS
//