Summary: Phage PP7 coat protein
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Phage PP7 coat protein Provide feedback
Members of this family form the capsid of P. aeruginosa phage PP7. They adopt a secondary structure consisting of a six stranded beta sheet and an alpha helix .
Tars K, Fridborg K, Bundule M, Liljas L; , Acta Crystallogr D Biol Crystallogr. 2000;56:398-405.: Structure determination of bacteriophage PP7 from Pseudomonas aeruginosa: from poor data to a good map. PUBMED:10739912 EPMC:10739912
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We make a range of alignments for each Pfam-A family:
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1Cannot generate PP/Heatmap alignments for seeds; no PP data available
Key: available, not generated, — not available.
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Curation and family details
|Number in seed:||2|
|Number in full:||2|
|Average length of the domain:||127.00 aa|
|Average identity of full alignment:||96 %|
|Average coverage of the sequence by the domain:||99.61 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 80369284 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||6|
|Download:||download the raw HMM for this family|
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For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the Phage_coat domain has been found. There are 17 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.
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