# STOCKHOLM 1.0
#=GF ID   RBD-FIP
#=GF AC   PF09457.11
#=GF DE   FIP domain 
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   pdb_2d7c
#=GF GA   23.30 23.30;
#=GF TC   23.30 23.30;
#=GF NC   23.10 22.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Motif
#=GF RN   [1]
#=GF RM   17030804
#=GF RT   Structural basis for Rab11-dependent membrane recruitment of a
#=GF RT   family of Rab11-interacting protein 3 (FIP3)/Arfophilin-1. 
#=GF RA   Shiba T, Koga H, Shin HW, Kawasaki M, Kato R, Nakayama K,
#=GF RA   Wakatsuki S; 
#=GF RL   Proc Natl Acad Sci U S A. 2006;103:15416-15421.
#=GF DR   INTERPRO; IPR019018;
#=GF DR   SO; 0001067; polypeptide_motif;
#=GF CC   The FIP domain is the Rab11-binding domain (RBD) at the
#=GF CC   C-terminus of a family of Rab11-interacting proteins (FIPs). The
#=GF CC   Rab proteins constitute the largest family of small GTPases (>60
#=GF CC   members in mammals). Among them Rab11 is a well characterised
#=GF CC   regulator of endocytic and recycling pathways. Rab11 associates
#=GF CC   with a broad range of post-Golgi organelles, including recycling
#=GF CC   endosomes [1].
#=GF SQ   10
#=GS RFIP3_HUMAN/716-756    AC O75154.1
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M f; 716-746;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ4 I; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M e; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ3 F; 720-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ4 C; 720-755;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ3 R; 720-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M F; 716-746;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M U; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ3 O; 720-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ3 L; 719-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M j; 716-746;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M E; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M i; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ3 C; 720-755;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ3 I; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 2HV8 E; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ3 U; 720-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M L; 716-746;
#=GS RFIP3_HUMAN/716-756    DR PDB; 2D7C D; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ4 F; 720-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 2HV8 F; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ4 L; 719-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M a; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 2D7C C; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M K; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4UJ3 X; 721-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M V; 716-746;
#=GS RFIP3_HUMAN/716-756    DR PDB; 2HV8 D; 716-756;
#=GS RFIP3_HUMAN/716-756    DR PDB; 4D0M b; 716-746;
#=GS RFP4A_DANRE/580-620    AC Q3LGD4.1
#=GS RB6I2_HUMAN/1068-1108  AC Q8IUD2.1
#=GS Q174W5_AEDAE/463-503   AC Q174W5.1
#=GS Q9VUD7_DROME/457-497   AC Q9VUD7.1
#=GS A7SE27_NEMVE/547-587   AC A7SE27.1
#=GS Q7QER7_ANOGA/548-595   AC Q7QER7.5
#=GS Q9VWS3_DROME/758-805   AC Q9VWS3.1
#=GS RFIP1_MOUSE/588-635    AC Q9D620.2
#=GS RFIP2_HUMAN/452-499    AC Q7L804.1
#=GS RFIP2_HUMAN/452-499    DR PDB; 2GZD C; 468-499;
#=GS RFIP2_HUMAN/452-499    DR PDB; 4C4P B; 452-499;
#=GS RFIP2_HUMAN/452-499    DR PDB; 3TSO D; 452-499;
#=GS RFIP2_HUMAN/452-499    DR PDB; 2K6S A; 4-41;
#=GS RFIP2_HUMAN/452-499    DR PDB; 2GZH B; 452-499;
#=GS RFIP2_HUMAN/452-499    DR PDB; 2K6S B; 4-41;
#=GS RFIP2_HUMAN/452-499    DR PDB; 2GZD D; 468-499;
#=GS RFIP2_HUMAN/452-499    DR PDB; 3TSO C; 452-499;
RFIP3_HUMAN/716-756               SRDELMEAIQKQEEINFR.......LQDYIDRIIVAIMETNPSILEVK
#=GR RFIP3_HUMAN/716-756    SS    -HHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHTXGGGGBXX
RFP4A_DANRE/580-620               SRDELVDALKEQEEINFR.......LRQYMDKIILAILDHNPSILEIK
RB6I2_HUMAN/1068-1108             TRGQLQDELEKGERDNAE.......LQEFANAILQQIADHCPDILEQV
Q174W5_AEDAE/463-503              SLTQLQIAFQDKEEENRR.......LKHYIETILLQVVEHYPQLLEVK
Q9VUD7_DROME/457-497              SQAQLQQAFQEKEDENVR.......LKHYIDTILLNIVENYPQLLEVK
A7SE27_NEMVE/547-587              NKDTVIDALRDQEEEARR.......LRGYLDSLLMIIMEHNPSLLEIT
Q7QER7_ANOGA/548-595              SREEVIKIAHTLETEVHYQKQKVKELEDYLDSLLLKVMECHPKILQNP
Q9VWS3_DROME/758-805              SREELMLIANGMENEALLQRQRVKELEDYLDNLLLRVMETHPKILQNP
RFIP1_MOUSE/588-635               THDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNILRVP
RFIP2_HUMAN/452-499               TYEEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPSILRVP
#=GR RFIP2_HUMAN/452-499    SS    THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGBSS
#=GC SS_cons                      THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGGBSS
#=GC seq_cons                     S+-ELhptlpcpEE-stR.......Lc-YlDslLlplMEcsPsILEls
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