# STOCKHOLM 1.0
#=GF ID   HtrL_YibB
#=GF AC   PF09612.11
#=GF DE   Bacterial protein of unknown function (HtrL_YibB)
#=GF AU   TIGRFAMs;
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   TIGRFAMs
#=GF GA   24.10 24.10;
#=GF TC   24.10 24.10;
#=GF NC   24.00 24.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   8157607
#=GF RT   Molecular analysis of the rfaD gene, for heptose synthesis, and
#=GF RT   the rfaF gene, for heptose transfer, in lipopolysaccharide
#=GF RT   synthesis in Salmonella typhimurium.
#=GF RA   Sirisena DM, MacLachlan PR, Liu SL, Hessel A, Sanderson KE;
#=GF RL   J Bacteriol. 1994;176:2379-2385.
#=GF DR   INTERPRO; IPR011735;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   The protein from this rare, uncharacterized protein family is
#=GF CC   designated HtrL or YibB in E. coli, where its gene is found in a
#=GF CC   region of LPS core biosynthesis genes [1]. Homologues are found
#=GF CC   in Shigella flexneri, Campylobacter jejuni, and Caenorhabditis
#=GF CC   elegans only. The htrL gene may represent an insertion to the
#=GF CC   LPS core biosynthesis region, rather than an LPS biosynthetic
#=GF CC   protein.
#=GF SQ   3
#=GS G0P9P4_CAEBE/462-728  AC G0P9P4.1
#=GS HTRL_ECOLI/3-268      AC P25666.2
#=GS A8Y4F1_CAEBR/518-784  AC A8Y4F1.2
G0P9P4_CAEBE/462-728             REVTLVTGFLDIGRGDWDMYR.......RPLETYHQFMETLLTLENNFVVFTDDSSYDFVIKTRTRLGLLHKTKVYNITLNDLPLYGYINEAKKIINDELNNATFYRTIADVDMKTHPESMSAEYNIVVNSKTYFLHNVTMENPFNSEHFVWLDAGYGHANENFFPYNYNWKPALPDGKISLIKVTPNFDDLSTYDIKKLYRKNVALISGGFIAGDKHSIGQLHSIIHRKFIQLIYQNHVDDDQTLLVLAVNSFPQLFHV...IHGDWFDAFRLFAA
HTRL_ECOLI/3-268                 SSTTIITAYFDIGRGDWTANKGFREKLARSVDVYFSYFERLAALENEMIIFTSPDLKPRVEAIRNG....KPTTVIVIDIKKKF.RYIRSRIEKI.....QKDESFTNRLEPRQLKNPEYWSPEYVLVCNLKAYFVNKAINMGLVKTPLVAWIDFGYCH.KPNVTRGLKIWDFPFDESKMHLFTIKKGLTVTSQQQVFDFMIGNHVYIIGGAIVGSQHKWKEFYKLVLESQKITLNNNIVDDDQGIFVMCYYKRPDLFNLNYLGRGKWFDLFRCFRS
A8Y4F1_CAEBR/518-784             RDVTIVTGFLDIGRGEWDVYR.......RPLETYHQFMETLLTLQNNFVVFTDDSTYDFVVKTRTKLGLMEKTKIHKITLNDLPLYGYINEARKIISDELKNETFYRTVADLDMRTHPESISAEYNIVVNSKTHFLHNVTMENPFNSEHFVWFDAGYGHANENHFPYNYYWRPALPDGKISLIKVTPEFDGLSDYDLSRLYRKNVALLSGGFISGDKHSIGQLHSIIHRKFIQLIYQNRIDDDQTLLTLAVNSFPQLFHV...IRGDWFDAFRLFAS
#=GC seq_cons                    R-VTIVTGFLDIGRGDWDsYR.......RPLETYHQFMETLLTLENNFVVFTDDSoYDFVlKTRT+LGLh+KTKVasITLNDLPLYGYINEA+KIIsDELpN-TFYRTlADlDM+THPEShSAEYNIVVNSKTYFLHNVTMENPFNSEHFVWlDAGYGHANENaFPYNYhW+PALPDGKISLIKVTPsFDsLSsYDlp+LYRKNVALISGGFIuGDKHSIGQLHSIIHRKFIQLIYQN+VDDDQTLLVLAVNSFPQLFHV...IRGDWFDAFRLFAS
//