# STOCKHOLM 1.0 #=GF ID VEFS-Box #=GF AC PF09733.10 #=GF DE VEFS-Box of polycomb protein #=GF AU Coggill P;0000-0001-5731-1588 #=GF GA 21.1 21.1 #=GF NC 21.0 21.0 #=GF TC 21.1 21.4 #=GF SE KOGs (KOG2350) #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 11701882 #=GF RT EMBRYONIC FLOWER2, a novel polycomb group protein homolog, #=GF RT mediates shoot development and flowering in Arabidopsis. #=GF RA Yoshida N, Yanai Y, Chen L, Kato Y, Hiratsuka J, Miwa T, Sung #=GF RA ZR, Takahashi S; #=GF RL Plant Cell. 2001;13:2471-2481. #=GF RN [2] #=GF RM 11546753 #=GF RT Su(z)12, a novel Drosophila Polycomb group gene that is #=GF RT conserved in vertebrates and plants. #=GF RA Birve A, Sengupta AK, Beuchle D, Larsson J, Kennison JA, #=GF RA Rasmuson-Lestander A, Muller J; #=GF RL Development. 2001;128:3371-3379. #=GF DR INTERPRO; IPR019135; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC The VEFS-Box (VRN2-EMF2-FIS2-Su(z)12) box is the C-terminal #=GF CC region of these proteins, characterised by an acidic cluster and #=GF CC a tryptophan/methionine-rich sequence, the acidic-W/M domain #=GF CC [1]. Some of these sequences are associated with a zinc-finger #=GF CC domain about 100 residues towards the N-terminus. This protein #=GF CC is one of the polycomb cluster of proteins which control HOX #=GF CC gene transcription as it functions in heterochromatin-mediated #=GF CC repression [2]. #=GF SQ 152 A0A178UYF6.1/251-386 LSAERSEARSHLL.LQKRQFYHSH..R.VQPMALEQV.M.......S......DR.....DSE.DE..VD..D...D.VADFED..RQMLDDF.V....DVNK...DEKQFMHLWNSF....V...R....K.......Q......R.............V.....I..A...D..GHISWACEAFSR.FYEKELHRY...sS.........LF.WCWRLFLIKLWNHGLVDSATINNCNT Q69KN0.1/454-589 LSVERADPRNRQL.LQKRQFFHSH..R.AQPMALEQV.F.......S......DR.....DSE.DE..VD..D...D.IADFED..RRMLDDF.V....DVTK...DEKLIMHMWNSF....V...R....K.......Q......R.............V.....L..A...D..GHIPWACEAFSQ.FHGQELVQN...pA.........LL.WCWRFFMVKLWNHSLLDARAMNACNT Q8W5B1.2/251-386 LSAERSEARSHLL.LQKRQFYHSH..R.VQPMALEQV.M.......S......DR.....DSE.DE..VD..D...D.VADFED..RQMLDDF.V....DVNK...DEKQFMHLWNSF....V...R....K.......Q......R.............V.....I..A...D..GHISWACEVFSR.FYEKELHCY...sS.........LF.WCWRLFLIKLWNHGLVDSATINNCNT A0A2K3P028.1/75-210 LNTDRSDSKNRML.LQKRQFFHSH..R.VQPMALDQV.L.......S......DR.....DSE.DE..VD..D...G.VANLED..RRMLDDF.V....DVSK...DEKQLMHLWNSF....M...R....K.......Q......R.............V.....L..A...D..GHVPWACEAFSK.LHAKELISS...qA.........LF.WCWRLFMIKLWNHGLLDACTMNNCNI A0A178UM24.1/490-624 -SIERSDLRNRSL.LQKRQFFHSH..R.AQPMALEQV.L.......S......DR.....DSE.DE..VD..D...D.VADFED..RRMLDDF.V....DVTK...DEKQMMHMWNSF....V...R....K.......Q......R.............V.....L..A...D..GHIPWACEAFSR.LHGPIMVRT...pH.........LI.WCWRVFMVKLWNHGLLDARTMNNCNT Q8L6Y4.2/490-624 -SIERSDLRNRSL.LQKRQFFHSH..R.AQPMALEQV.L.......S......DR.....DSE.DE..VD..D...D.VADFED..RRMLDDF.V....DVTK...DEKQMMHMWNSF....V...R....K.......Q......R.............V.....L..A...D..GHIPWACEAFSR.LHGPIMVRT...pH.........LI.WCWRVFMVKLWNHGLLDARTMNNCNT Q0JF48.1/474-609 LSANRADPRNRLL.LQKRQFIHSH..K.AQPMTFEEV.L.......S......DN.....DSE.DE..VD..D...D.IADLED..RRMLDDF.V....DVTK...DEKRIMHMWNSF....I...R....K.......Q......S.............I.....L..A...D..SHVPWACEAFSR.HHGEELLEN...sA.........LL.WGWRMFMIKLWNHSLLSARTMDTCNR A0A178UU39.1/12-151 VPAKRSKATSHYLpLHKRQFYHSR..T.GQPLSLEQV.M.......S......DR.....DSE.ND..VDknD...D.AAHLEE..SQMLNGS.M....DENE..iVAERFIKLWNSF....V...K....Q.......Q......R.............I.....V..A...D..AHIPWACEAFSR.LHLQELRSN...lS.........LD.LCWRQFMIKQWDYGLLDRVTMNKCNT B3H7I2.1/12-151 VPAKRSKATSHYLpLHKRQFYHSR..T.GQPLSLEQV.M.......S......DR.....DSE.ND..VDknD...D.AAHLEE..SQMLNGS.M....DENE..iVAERFIKLWNSF....V...K....Q.......Q......R.............I.....V..A...D..AHIPWACEAFSR.LHLQELRSN...lS.........LD.LCWRQFMIKQWDYGLLDRVTMNKCNT A0A0L8I2V6.1/559-688 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EDGEVEQQRTYSS.GHNRLYFHSD..T.CLPLRPQEM.E.......-......-V.....DSE.DE..KD..P...E.WLREKT..ITQIEEF.S....DVNE...GEKEVMKLWNLH....V...M....K.......H......G.............F.....I..A...D..NQMNHACMLFVE.NYGQKIIKK....N.........LC.RNFMLHLVSMHDFNLISIMSIDKAVT Q15022.3/547-679 EDGEVEQQRTYSS.GHNRLYFHSD..T.CLPLRPQEM.E.......-......-V.....DSE.DE..KD..P...E.WLREKT..ITQIEEF.S....DVNE...GEKEVMKLWNLH....V...M....K.......H......G.............F.....I..A...D..NQMNHACMLFVE.NYGQKIIKK....N.........LC.RNFMLHLVSMHDFNLISIMSIDKAVT A0A1S3IUG4.1/492-622 -ESDPHNTRQLAQ.GHNRLYYHTG..T.CQPVRPQEI.D.......-......-E.....DSE.SE..ND..P...M.WLREKT..IQMLDEF.T....DVNE...GEKEIMKMWNIH....V...M....R.......N......N.............Y.....I..A...D..CQFTTACQTFVA.EHGVTIVEK....N.........LC.RNFLLHMINLYDFGLIKPEIITQTM- A0A3M0J341.1/427-558 EDGEVEQQRTYSS.GHNRLYFHSD..T.CLPLRPQEM.E.......-......-V.....DSE.DE..KD..P...E.WLREKT..ITQIEEF.S....DVNE...GEKEVMKLWNLH....V...M....K.......H......G.............F.....I..A...D..NQMNHACMLFVE.NYGQKIIKK....N.........LC.RNFMLHLVSMHDFNLISIMSIDKAV- A0A0G2JV08.1/525-657 EDGEVEQQRTYSS.GHNRLYFHSD..T.CLPLRPQEM.E.......-......-V.....DSE.DE..KD..P...E.WLREKT..ITQIEEF.S....DVNE...GEKEVMKLWNLH....V...M....K.......H......G.............F.....I..A...D..NQMNHACMLFVE.NYGQKIIKK....N.........LC.RNFMLHLVSMHDFNLISIMSIDKAVT A0A0G2K2I0.1/548-680 EDGEVEQQRTYSS.GHNRLYFHSD..T.CLPLRPQEM.E.......-......-V.....DSE.DE..KD..P...E.WLREKT..ITQIEEF.S....DVNE...GEKEVMKLWNLH....V...M....K.......H......G.............F.....I..A...D..NQMNHACMLFVE.NYGQKIIKK....N.........LC.RNFMLHLVSMHDFNLISIMSIDKAVT A0A158P233.1/504-634 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