Summary: Integral membrane protein S linking to the trans Golgi network
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Integral membrane protein S linking to the trans Golgi network Provide feedback
Members of this family are integral membrane proteins involved in protein trafficking between the late Golgi and endosome. They may also serve as a receptor for ADP-ribosylation factor-related protein 1 (ARFRP1) . Sys1p is a small integral membrane protein with four predicted transmembrane domains that localises to the Trans Golgi network TGN in yeast and human cells .
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR019185
Members of this family are integral membrane proteins involved in protein trafficking between the late Golgi and endosome. They may also serve as a receptor for ADP-ribosylation factor-related protein 1 (ARFRP1) [PUBMED:15203023]. Sys1p is a small integral membrane protein with four predicted transmembrane domains that localises to the Trans Golgi network TGN in yeast and human cells [PUBMED:16926193].
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We make a range of alignments for each Pfam-A family:
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Curation and family details
|Seed source:||KOGs (KOG4697)|
|Author:||KOGs, Finn RD, Sammut SJ|
|Number in seed:||27|
|Number in full:||331|
|Average length of the domain:||132.70 aa|
|Average identity of full alignment:||30 %|
|Average coverage of the sequence by the domain:||71.10 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||4|
|Download:||download the raw HMM for this family|
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