Summary: Predicted nucleotidyltransferase
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Predicted nucleotidyltransferase Provide feedback
Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.
- the number of sequences which exhibit this architecture
a textual description of the architecture, e.g. Gla, EGF x 2, Trypsin.
This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
- the UniProt description of the protein sequence
- the number of residues in the sequence
- the Pfam graphic itself.
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This clan contains a diverse set of nucleotidyltransferase enzymes.
The clan contains the following 23 members:AbiEii Adenyl_cycl_N Adenyl_transf Aminoglyc_resit DNA_pol_B_palm DUF2204 DUF294 DZF GlnE GrpB LicD MdcG Mmp37 NTP_transf_2 NTP_transf_5 NTP_transf_6 NTP_transf_7 NTP_transf_8 Nuc-transf PolyA_pol Pox_polyA_pol RelA_SpoT RsfS
We make a range of alignments for each Pfam-A family:
- the curated alignment from which the HMM for the family is built
- the alignment generated by searching the sequence database using the HMM
- Representative Proteomes (RPs) at 15%, 35%, 55% and 75% co-membership thresholds
- alignment generated by searching the UniProtKB sequence database using the family HMM
- alignment generated by searching the NCBI sequence database using the family HMM
- alignment generated by searching the metagenomics sequence database using the family HMM
You can see the alignments as HTML or in three different sequence viewers:
1Cannot generate PP/Heatmap alignments for seeds; no PP data available
Key: available, not generated, — not available.
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Curation and family details
|Seed source:||COGs (COG3541)|
|Author:||COGs, Finn RD, Sammut SJ|
|Number in seed:||29|
|Number in full:||370|
|Average length of the domain:||213.30 aa|
|Average identity of full alignment:||21 %|
|Average coverage of the sequence by the domain:||79.82 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||6|
|Download:||download the raw HMM for this family|
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