# STOCKHOLM 1.0
#=GF ID   Dev_Cell_Death
#=GF AC   PF10539.10
#=GF DE   Development and cell death domain
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   PROSITE_PS51222
#=GF GA   27.80 27.80;
#=GF TC   28.10 28.40;
#=GF NC   27.10 27.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cut_ga HMM metaseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   16008837
#=GF RT   DCD - a novel plant specific domain in proteins involved in
#=GF RT   development and programmed cell death. 
#=GF RA   Tenhaken R, Doerks T, Bork P; 
#=GF RL   BMC Bioinformatics. 2005;6:169.
#=GF DR   INTERPRO; IPR013989;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   The DCD domain is found in plant proteins involved in
#=GF CC   development and cell death. The DCD domain is an approximately
#=GF CC   130 amino acid long stretch that contains several mostly
#=GF CC   invariable motifs. These include a FGLP and a LFL motif at the
#=GF CC   N-terminus and a PAQV and a PLxE motif towards the C-terminus of
#=GF CC   the domain. The DCD domain is present in proteins with different
#=GF CC   architectures. Some of these proteins contain additional
#=GF CC   recognisable motifs, like the KELCH repeats or the ParB domain.
#=GF SQ   2
#=GS EBX98890.1/5-50    DE [subseq from] hypothetical protein GOS_6357056 [marine metagenome]
#=GS EBX98890.1/101-185 DE [subseq from] hypothetical protein GOS_6357056 [marine metagenome]
EBX98890.1/5-50            AGVVFLCDPRTEEECLRRGLFGLPATQISTMRAVVPEMTlLFLFNV--------------------------....---------------.-----------------------------------------
EBX98890.1/101-185         ---------------------------------------.------RSRRMLGVFRATCWPQQNLEPLAWGEevgsGGSRFPLQVRVRLDSpAVYSLSEDHLRTVL--DYHGTLNRFDLAIPKDAAAALVSLF
#=GC PP_cons               59********************************99987.6***976899********************77....899*********987.5789*********8..899999*****************99
#=GC RF                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
//