Summary: Exopolysaccharide production repressor
Exopolysaccharide production repressor Provide feedback
SyrA is a small protein located in the cytoplasmic membrane that lacks an apparent DNA binding domain. SyrA mediates the transcriptional up-regulation of exo genes involved in the biosynthesis of the symbiotic exopolysaccharide succinoglycan. It does this through a mechanism which requires a two component system .
Keating DH; , J Bacteriol. 2007;189:2510-2520.: Sinorhizobium meliloti SyrA mediates the transcriptional regulation of genes involved in lipopolysaccharide sulfation and exopolysaccharide biosynthesis. PUBMED:17209018 EPMC:17209018
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR024239
SyrA is a small protein located in the cytoplasmic membrane that lacks an apparent DNA binding domain. SyrA mediates the transcriptional up-regulation of exo genes involved in the biosynthesis of the symbiotic exopolysaccharide succinoglycan. It does this through a mechanism which requires a two component system [PUBMED:17209018].
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This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
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We make a range of alignments for each Pfam-A family:
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Curation and family details
|Author:||Pollington J, Finn RD|
|Number in seed:||6|
|Number in full:||37|
|Average length of the domain:||37.80 aa|
|Average identity of full alignment:||45 %|
|Average coverage of the sequence by the domain:||41.27 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||3|
|Download:||download the raw HMM for this family|
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