Summary: Head fiber protein
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Head fiber protein Provide feedback
This head fiber protein is also refereed to as Gp8.5. Gp8.5 is a structural protein in phage. It is a dispensable head protein.
Tao Y, Olson NH, Xu W, Anderson DL, Rossmann MG, Baker TS; , Cell. 1998;95:431-437.: Assembly of a tailed bacterial virus and its genome release studied in three dimensions. PUBMED:9814712 EPMC:9814712
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR022741This entry is represented by Bacteriophage B103, Gp8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Gp8 (Gene locus 8.5 in contig X99260_GR) is a structural head protein in phage and is dispensable.
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This example describes an architecture with one
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Curation and family details
|Author:||Pollington J, Finn RD|
|Number in seed:||3|
|Number in full:||66|
|Average length of the domain:||123.30 aa|
|Average identity of full alignment:||22 %|
|Average coverage of the sequence by the domain:||66.00 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||3|
|Download:||download the raw HMM for this family|
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For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the Phage_head_fibr domain has been found. There are 1 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.
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