# STOCKHOLM 1.0 #=GF ID HnRNPA1 #=GF AC PF11627.9 #=GF DE Nuclear factor hnRNPA1 #=GF AU Pollington J;0000-0002-8158-8998 #=GF GA 25.0 25.0 #=GF NC 24.4 24.4 #=GF TC 25.0 25.0 #=GF SE pdb_2h4m #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 15776420 #=GF RT HnRNP A3 genes and pseudogenes in the vertebrate genomes. #=GF RA Makeyev AV, Kim CB, Ruddle FH, Enkhmandakh B, Erdenechimeg L, #=GF RA Bayarsaihan D; #=GF RL J Exp Zoolog A Comp Exp Biol. 2005;303:259-271. #=GF DR INTERPRO; IPR021662; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC This family of proteins represents hnRNPA1, a nuclear factor #=GF CC that binds to Pol II transcripts. The family of hnRNP proteins #=GF CC are involved in numerous RNA-related activities [1]. #=GF SQ 65 A0A1A6HQZ6.1/155-192 GGGGSYNDFGN.YN.HQSSNFGPMKG....GNFGG..RSSG..PYGGG A0A1A6GXP9.1/179-216 GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG P04256.3/255-292 GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG P49312.2/255-292 GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG Q32P51.2/255-292 GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG A0A2R8Y4L2.1/210-247 GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFEG..RSSG..PHGGG P09651.5/307-344 GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG A0A1A6FZR1.1/205-242 GGGGSYNDFGN.YN.NQSSNFGPVKG....GKFGG..RNSG..PYGGG G5C268.1/247-283 -GGGGYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG A0A3Q0FNR1.1/248-285 GGGGNYNDFGS.YN.SQSSNFGPMKG....GSFGG..RSSG..PYGGG A0A4U5SK24.1/308-345 GGGGSYNDFGS.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG Q5ZLB3.1/314-351 GGGGNYNDFGS.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG A0A1D5P5G1.2/287-324 GGGGNYNDFGS.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG G1KG94.2/311-347 GGGGNYNDFGS.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGG- D4ACJ7.2/190-227 GGGGSYNDFGN.YN.NHSSNFGPMKG....GNLGG..RNSG..PYGGG A0A402F7N9.1/293-329 GGGGNYNDFGS.YN.SQSSNFGPMKG....GNFGG..RSSG..PYGG- A0A3M0IR33.1/114-151 GGGGSYNDFGS.YN.NQASSFGPMKG....GSFGG..RSSG..PYGGG L5KWZ7.1/145-182 GGSGSYNDFGN.YN.NQSSDFGPMKG....ENFRG..RSSG..PYSGG K7F9W5.1/210-248 GGGGNYNDFGS.YN.SQSSNFGPMKG....GNFGG.gRSSG..PYGSG A0A4W3H9Z4.1/263-300 GGGGNYNDFGS.YS.QHSSNFGPMKG....GNFGG..RNMG.gPYGG- V9KJD1.1/285-322 GGGGNYNDFGS.YS.QHSSNFGPMKG....GNFGG..RNMG.gPYGG- F6S8U9.1/119-156 GGAGSYNDFGN.YN.NQSSDFGPMKG....GNFGG..WSSD..PYGGG L8Y7W0.1/237-273 GGGGSYNDFGN.YN.NQSSNVGPMKG....GNFGG..RSSS..PYGG- B0V1I7.1/257-294 GGGGNYNDFGN.YG.GQQSNFGPMKG....NNFGG..RNSG..PYGGG A0A402ENF0.1/295-333 -GGGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG G1KN60.2/275-313 -GGGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG F1R4I4.1/72-109 GGGGNYNDFGN.YN.SQQSNYGPMKG....NFGGG.gRNSG..PYGG- F6WMD0.2/168-207 GGSGNYNDFGN.YSgQQQSNYGPMKG....GSFGG..RSSG.sPYGGG A0A3L8SZ70.1/297-335 -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG H9H7H1.2/200-239 GGSGNYNDFGN.YSgQQQSNYGPMKG....GSFGG..RSSG.sPYGGG A0A401S423.1/282-319 GGGGNYNDFGN.YH.HQNSNFGPMKG....GNYGG..RNMG.gPYGG- A0A4U5T130.1/296-333 -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGG- G3HRU7.1/120-159 GGGGNYNDFGN.YSgQQQSNYGPMKG....GSFGG..RCSG.sPYGFG F6XNZ3.1/289-326 -RGCRYNDFGN.YNnQSSSSFGPMKG....GNYGG.gRNSG..PYGG- G5BAA4.1/141-180 GGGGNYNDFGN.YSgQQQSNYGPMKW....GSFGG..RSSG.sPYGGG K7F526.1/273-313 GGSGNYNDFGN.YSgQQQSNYGPMKG...gGSFGG..RSSG.sPYGGG A0A3Q0FPV4.1/313-353 GGSGNYNDFGN.YSgQQQSNYGPMKG...gGSFGG..RSSG.sPYGGG M7BWI4.1/299-338 -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMGggPYGGG A0A3Q2U0R8.1/264-302 -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG A0A3L8SGF2.1/299-338 GGSGNYNDFGN.YSgQQQSNYGPMKG...gGSFGG..RSSG.sPYGG- R0JQ46.1/282-320 -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG K7F3X0.1/280-318 -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG F7G312.1/186-221 -SGGSYNDFSN.YN.NQSSNFGPMRR....GNFGG..RSSG..PYGG- L8YAH4.1/173-211 -GSENYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG F6UFR5.1/248-287 GGSGNYNDFGN.YSgQQQSNYGPMKG....GSFGG..RSSG.sPYGGG A0A3B3Z8A9.1/284-321 GGGGNYNDFGN.YG.GQQSNYGPMKG....-NYGG..RNSG.sPYGGG A0A3M0LB36.1/307-334 ----------S.YN.NQASSFGPMKG....GSFGG..RSSG..PYGGG H3B3G3.1/260-298 GYGNGYNNFGS.YD.QHQSSFGPMKG....GGYSG.rNNSG..PYRGG B5X3S8.1/249-286 -GGNGYNDFGEdYG.QQSSGYGAMKG....GNYSG..RSAA..PYSRG L9KSN5.1/198-231 -GSGNYNDFGN.YN.QQPSNYGPKKS....GNFGG.sRNMV..G---- F6ZMQ9.1/252-291 --GNGYNSFGS.YS.QHQSSYGPMKGa.gsGSWNR.pNTSG..PYRGG H3ASZ3.1/259-295 --GNGYNNFGS.YS.QHQASYGPMKG....GSFSG.rSNSG..PYRGG A0A498M1I6.1/448-487 GGGGGYNDFGN.YNnQSSSNYGPMKG....GNYGGggRSGG.gPYG-- A0A401Q5S1.1/296-333 GGGGNYNDFGN.YH.HQNSNFGPMKG....GNYGG..RNMG.gPYGG- A0A498LSH0.1/224-263 -GGGNYSDFGN.YN.NQQSNYGPMKGnfggGGG-G.gRNSG..PYGG- F8W265.1/101-140 GGGNGYSDFGSgYG.QQSSGYGPMKG...gNTYGG..RSGA..PYPRG A0A498P581.1/445-484 GGGGGYNDFGN.YNnQSSSNYGPMKG....GNYGGggRSGG.gPYG-- A0A498N1Y3.1/204-242 GNGNGYSDFGEgYG.QQASGYGAMKA....GYYSG..RSSG..PYPRG L9L8Z0.1/110-134 --GGSYNDFGN.YS.YQSSNFGPKEG....GIW--..----..----- B5X3U2.1/230-266 -GGNGYSDFGGgYS.EQSSNYGPMKG....-NYSG..RSSA..PYTRG L9L3Q2.1/71-108 GGDGSHDDFVN.YN.NQSSSSGPTNG....GNFGD..RSSD..HYGSG A0A3B4ABI7.1/244-280 GGGNNYNNMGH.YE.PQPSNFGPMKNn.fgGGGGG..RNFG..G---- A0A4W3JCE5.1/256-292 -GGGSYSDFGS.YDsQQSSNYGPMKS....-SSCG..RNTS..PYSSG A0A4U5T0Q5.1/41-66 -----------.YI.NQSSNSGAIKE....GKFGG..RSSG..PYDG- A0A3B4AD22.1/235-273 GGGNNYNNMGH.YE.PQPSNFGPMKNn.fgGGGGG..RNFG..GGR-- //