# STOCKHOLM 1.0
#=GF ID HnRNPA1
#=GF AC PF11627.9
#=GF DE Nuclear factor hnRNPA1
#=GF AU Pollington J;0000-0002-8158-8998
#=GF GA 25.0 25.0
#=GF NC 24.4 24.4
#=GF TC 25.0 25.0
#=GF SE pdb_2h4m
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Family
#=GF RN [1]
#=GF RM 15776420
#=GF RT HnRNP A3 genes and pseudogenes in the vertebrate genomes. 
#=GF RA Makeyev AV, Kim CB, Ruddle FH, Enkhmandakh B, Erdenechimeg L,
#=GF RA Bayarsaihan D; 
#=GF RL J Exp Zoolog A Comp Exp Biol. 2005;303:259-271.
#=GF DR INTERPRO; IPR021662;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC This family of proteins represents hnRNPA1, a nuclear factor
#=GF CC that binds to Pol II transcripts. The family of hnRNP proteins
#=GF CC are involved in numerous RNA-related activities [1].
#=GF SQ 65
A0A1A6HQZ6.1/155-192 GGGGSYNDFGN.YN.HQSSNFGPMKG....GNFGG..RSSG..PYGGG
A0A1A6GXP9.1/179-216 GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG
P04256.3/255-292     GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG
P49312.2/255-292     GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG
Q32P51.2/255-292     GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG
A0A2R8Y4L2.1/210-247 GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFEG..RSSG..PHGGG
P09651.5/307-344     GGGGSYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG
A0A1A6FZR1.1/205-242 GGGGSYNDFGN.YN.NQSSNFGPVKG....GKFGG..RNSG..PYGGG
G5C268.1/247-283     -GGGGYNDFGN.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG
A0A3Q0FNR1.1/248-285 GGGGNYNDFGS.YN.SQSSNFGPMKG....GSFGG..RSSG..PYGGG
A0A4U5SK24.1/308-345 GGGGSYNDFGS.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG
Q5ZLB3.1/314-351     GGGGNYNDFGS.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG
A0A1D5P5G1.2/287-324 GGGGNYNDFGS.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGGG
G1KG94.2/311-347     GGGGNYNDFGS.YN.NQSSNFGPMKG....GNFGG..RSSG..PYGG-
D4ACJ7.2/190-227     GGGGSYNDFGN.YN.NHSSNFGPMKG....GNLGG..RNSG..PYGGG
A0A402F7N9.1/293-329 GGGGNYNDFGS.YN.SQSSNFGPMKG....GNFGG..RSSG..PYGG-
A0A3M0IR33.1/114-151 GGGGSYNDFGS.YN.NQASSFGPMKG....GSFGG..RSSG..PYGGG
L5KWZ7.1/145-182     GGSGSYNDFGN.YN.NQSSDFGPMKG....ENFRG..RSSG..PYSGG
K7F9W5.1/210-248     GGGGNYNDFGS.YN.SQSSNFGPMKG....GNFGG.gRSSG..PYGSG
A0A4W3H9Z4.1/263-300 GGGGNYNDFGS.YS.QHSSNFGPMKG....GNFGG..RNMG.gPYGG-
V9KJD1.1/285-322     GGGGNYNDFGS.YS.QHSSNFGPMKG....GNFGG..RNMG.gPYGG-
F6S8U9.1/119-156     GGAGSYNDFGN.YN.NQSSDFGPMKG....GNFGG..WSSD..PYGGG
L8Y7W0.1/237-273     GGGGSYNDFGN.YN.NQSSNVGPMKG....GNFGG..RSSS..PYGG-
B0V1I7.1/257-294     GGGGNYNDFGN.YG.GQQSNFGPMKG....NNFGG..RNSG..PYGGG
A0A402ENF0.1/295-333 -GGGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG
G1KN60.2/275-313     -GGGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG
F1R4I4.1/72-109      GGGGNYNDFGN.YN.SQQSNYGPMKG....NFGGG.gRNSG..PYGG-
F6WMD0.2/168-207     GGSGNYNDFGN.YSgQQQSNYGPMKG....GSFGG..RSSG.sPYGGG
A0A3L8SZ70.1/297-335 -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG
H9H7H1.2/200-239     GGSGNYNDFGN.YSgQQQSNYGPMKG....GSFGG..RSSG.sPYGGG
A0A401S423.1/282-319 GGGGNYNDFGN.YH.HQNSNFGPMKG....GNYGG..RNMG.gPYGG-
A0A4U5T130.1/296-333 -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGG-
G3HRU7.1/120-159     GGGGNYNDFGN.YSgQQQSNYGPMKG....GSFGG..RCSG.sPYGFG
F6XNZ3.1/289-326     -RGCRYNDFGN.YNnQSSSSFGPMKG....GNYGG.gRNSG..PYGG-
G5BAA4.1/141-180     GGGGNYNDFGN.YSgQQQSNYGPMKW....GSFGG..RSSG.sPYGGG
K7F526.1/273-313     GGSGNYNDFGN.YSgQQQSNYGPMKG...gGSFGG..RSSG.sPYGGG
A0A3Q0FPV4.1/313-353 GGSGNYNDFGN.YSgQQQSNYGPMKG...gGSFGG..RSSG.sPYGGG
M7BWI4.1/299-338     -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMGggPYGGG
A0A3Q2U0R8.1/264-302 -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG
A0A3L8SGF2.1/299-338 GGSGNYNDFGN.YSgQQQSNYGPMKG...gGSFGG..RSSG.sPYGG-
R0JQ46.1/282-320     -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG
K7F3X0.1/280-318     -GSGNYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG
F7G312.1/186-221     -SGGSYNDFSN.YN.NQSSNFGPMRR....GNFGG..RSSG..PYGG-
L8YAH4.1/173-211     -GSENYNDFGN.YN.QQPSNYGPMKS....GNFGG.sRNMG.gPYGGG
F6UFR5.1/248-287     GGSGNYNDFGN.YSgQQQSNYGPMKG....GSFGG..RSSG.sPYGGG
A0A3B3Z8A9.1/284-321 GGGGNYNDFGN.YG.GQQSNYGPMKG....-NYGG..RNSG.sPYGGG
A0A3M0LB36.1/307-334 ----------S.YN.NQASSFGPMKG....GSFGG..RSSG..PYGGG
H3B3G3.1/260-298     GYGNGYNNFGS.YD.QHQSSFGPMKG....GGYSG.rNNSG..PYRGG
B5X3S8.1/249-286     -GGNGYNDFGEdYG.QQSSGYGAMKG....GNYSG..RSAA..PYSRG
L9KSN5.1/198-231     -GSGNYNDFGN.YN.QQPSNYGPKKS....GNFGG.sRNMV..G----
F6ZMQ9.1/252-291     --GNGYNSFGS.YS.QHQSSYGPMKGa.gsGSWNR.pNTSG..PYRGG
H3ASZ3.1/259-295     --GNGYNNFGS.YS.QHQASYGPMKG....GSFSG.rSNSG..PYRGG
A0A498M1I6.1/448-487 GGGGGYNDFGN.YNnQSSSNYGPMKG....GNYGGggRSGG.gPYG--
A0A401Q5S1.1/296-333 GGGGNYNDFGN.YH.HQNSNFGPMKG....GNYGG..RNMG.gPYGG-
A0A498LSH0.1/224-263 -GGGNYSDFGN.YN.NQQSNYGPMKGnfggGGG-G.gRNSG..PYGG-
F8W265.1/101-140     GGGNGYSDFGSgYG.QQSSGYGPMKG...gNTYGG..RSGA..PYPRG
A0A498P581.1/445-484 GGGGGYNDFGN.YNnQSSSNYGPMKG....GNYGGggRSGG.gPYG--
A0A498N1Y3.1/204-242 GNGNGYSDFGEgYG.QQASGYGAMKA....GYYSG..RSSG..PYPRG
L9L8Z0.1/110-134     --GGSYNDFGN.YS.YQSSNFGPKEG....GIW--..----..-----
B5X3U2.1/230-266     -GGNGYSDFGGgYS.EQSSNYGPMKG....-NYSG..RSSA..PYTRG
L9L3Q2.1/71-108      GGDGSHDDFVN.YN.NQSSSSGPTNG....GNFGD..RSSD..HYGSG
A0A3B4ABI7.1/244-280 GGGNNYNNMGH.YE.PQPSNFGPMKNn.fgGGGGG..RNFG..G----
A0A4W3JCE5.1/256-292 -GGGSYSDFGS.YDsQQSSNYGPMKS....-SSCG..RNTS..PYSSG
A0A4U5T0Q5.1/41-66   -----------.YI.NQSSNSGAIKE....GKFGG..RSSG..PYDG-
A0A3B4AD22.1/235-273 GGGNNYNNMGH.YE.PQPSNFGPMKNn.fgGGGGG..RNFG..GGR--
//