HMMER3/f [3.1b2 | February 2015] NAME HnRNPA1 ACC PF11627.9 DESC Nuclear factor hnRNPA1 LENG 38 ALPH amino RF no MM no CONS yes CS no MAP yes DATE Sat Apr 18 18:23:05 2020 NSEQ 23 EFFN 4.843140 CKSUM 2309302259 GA 25.00 25.00; TC 25.00 25.00; NC 24.40 24.40; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.9004 0.71955 STATS LOCAL VITERBI -8.2194 0.71955 STATS LOCAL FORWARD -3.9816 0.71955 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 3.24615 4.66309 3.07756 3.13956 3.21041 1.57484 4.15121 4.10645 2.82779 3.50484 3.85017 2.43866 3.12402 3.17973 3.05953 2.13533 3.45272 3.69330 5.38085 2.61621 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.00000 * 1 3.31252 5.51200 3.48333 2.61904 4.93921 0.72941 4.35089 4.36409 3.07173 3.20992 4.75550 3.60541 4.48557 3.50578 2.83900 2.77606 3.58647 3.99537 6.13089 4.80692 1 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 2 3.10911 5.60516 2.76461 2.46425 4.93690 1.23147 4.06092 4.41944 2.82209 3.90558 4.65492 2.54413 4.25416 3.16626 2.85019 2.22437 3.34463 3.98982 6.04472 3.53548 2 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 3 3.59422 5.76005 2.30188 3.38414 5.97360 0.49082 5.08445 5.54393 4.28190 5.08647 5.92659 3.86746 4.77411 4.30499 4.86210 2.22022 4.06924 4.84122 7.21536 5.79277 3 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.20756 5.31938 1.70079 0.61958 0.77255 0.48576 0.95510 4 2.98842 3.32391 3.60672 3.09134 4.77149 1.19336 4.26404 4.20718 3.02414 3.78794 4.58274 2.36040 4.28128 3.41526 2.00562 2.62737 3.31413 3.78047 5.98732 4.67341 4 g - - - 2.68621 4.42228 2.77522 2.73126 3.46357 2.40516 3.72497 3.29357 2.67744 2.69358 4.24693 2.90294 2.73742 3.18149 2.89804 2.37890 2.77522 2.98521 4.58480 3.61506 0.12480 2.64804 3.06758 0.25568 1.48893 0.69368 0.69261 5 3.08171 5.38241 3.36986 2.93993 4.99966 1.99031 4.21473 4.47037 2.95960 3.98425 4.75213 1.81253 4.29460 3.34046 2.38510 1.40132 3.38418 4.00200 6.12785 4.76242 6 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00865 5.15018 5.87252 0.61958 0.77255 0.27427 1.42766 6 3.70556 3.49108 5.28526 4.84901 3.24868 4.62527 4.59900 3.75376 4.62704 2.81201 4.43744 4.73484 5.10666 4.77586 4.69991 3.09777 4.01453 3.56173 4.88649 0.45142 7 Y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 7 3.38023 5.42923 3.74140 3.73074 5.85660 2.51441 5.23956 5.41664 4.34603 5.00057 5.79775 0.45117 4.73199 4.47949 4.77328 2.31879 3.89483 4.64550 7.11494 5.81058 8 N - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 8 2.82480 5.89684 0.79535 2.88366 5.24981 3.95277 4.37185 4.75268 3.26073 4.25962 5.05376 2.87458 4.48823 3.51119 3.79948 2.00143 3.70199 4.32454 6.41700 3.46135 9 d - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 9 3.18544 4.60667 4.91326 4.33279 0.89547 2.86927 4.61672 3.01415 4.16230 2.13061 2.84922 4.40648 4.68520 4.33015 4.24741 3.07529 3.42769 2.84756 5.14160 3.88957 10 f - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 10 2.61568 3.16405 4.55866 3.15355 5.46208 0.39520 5.43425 4.88051 4.52873 4.58318 5.39571 4.40292 4.68844 4.75208 4.78201 3.37435 3.70928 4.24392 6.81198 5.65228 11 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 11 3.14028 5.65905 2.82617 2.75641 4.99816 3.84653 3.07458 4.48684 2.51179 3.96064 4.70717 1.44983 4.27302 2.52613 3.33479 1.56876 3.37626 4.04777 6.08998 4.67063 12 n - - - 2.68625 4.42232 2.77526 2.73130 3.46361 2.40443 3.72501 3.29361 2.67747 2.69362 4.24696 2.90353 2.73746 3.18153 2.89807 2.37893 2.77526 2.98525 4.58484 3.61510 0.13756 2.07036 6.04172 0.14651 1.99304 0.48576 0.95510 12 4.74315 3.35988 5.99633 5.90628 3.27182 5.24677 4.81512 4.92610 5.64745 4.25730 5.56398 5.39873 5.78721 5.60755 5.55391 4.85840 5.13023 4.77276 4.93438 0.19020 14 Y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 13 3.67510 6.30213 2.54894 2.34669 5.62994 2.01317 4.51713 5.16645 3.49698 4.62408 5.43732 0.91137 4.61066 3.66562 4.09515 2.18962 3.95680 4.70135 6.76496 5.24720 15 n - - - 2.68624 4.42231 2.77526 2.73129 3.46360 2.40476 3.72500 3.29360 2.67747 2.69361 4.24696 2.90311 2.73746 3.18152 2.89807 2.37893 2.77526 2.98524 4.58483 3.61509 0.12269 2.17964 6.04172 0.15955 1.91409 0.48576 0.95510 14 3.10910 5.56899 3.27902 2.78731 4.91998 3.84643 3.33872 4.39594 2.81280 3.88871 4.64305 1.90317 4.26469 1.40363 3.29250 2.05629 2.51655 3.97154 6.02939 4.62967 17 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 15 3.05633 5.52992 2.85541 2.74959 4.86236 3.82182 2.57437 4.33729 2.74733 3.27619 4.57648 3.29482 3.43381 1.09481 2.93709 2.67028 3.28745 3.91464 5.96764 4.56797 18 q - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 16 3.10954 5.36409 3.56068 3.09163 5.05004 2.70572 4.34783 4.51884 3.13055 4.05356 4.81656 3.57214 2.53516 1.81819 3.59479 1.11759 2.83023 4.03712 6.21408 4.85502 19 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 17 3.68651 5.54765 5.19326 5.21876 5.98532 4.28082 6.12068 5.79969 5.40225 5.41861 6.28722 5.03530 5.12100 5.60123 5.47971 0.12391 4.26686 4.96607 7.18122 6.14400 20 S - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 18 3.66636 6.14582 2.31364 2.98765 5.71961 2.18302 4.64483 5.26172 3.66840 4.73714 5.55964 0.84864 4.65655 3.80713 4.26923 1.91245 3.99931 4.74776 6.88118 5.37533 21 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 19 4.95210 6.00898 6.02523 5.86439 0.91298 5.60768 4.42213 4.60125 5.64496 2.83565 5.16478 5.23681 5.88337 5.37972 5.48800 3.30011 5.15952 4.51574 4.51134 0.89440 22 y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 20 3.57274 5.68117 3.46762 2.71752 5.93627 0.36474 5.14659 5.48517 4.27426 5.04992 5.89535 3.95398 4.79412 4.37910 4.75959 2.75933 4.05987 4.79159 7.17214 5.80934 23 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.08033 5.31938 2.62701 0.61958 0.77255 0.48576 0.95510 21 3.11010 5.03971 4.77032 4.70258 5.71748 3.80453 5.66248 5.20495 4.81635 4.89329 5.66926 4.49853 0.36625 5.01873 4.96966 2.56947 2.70086 4.37562 7.04626 5.94351 24 P - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00785 5.24690 5.96924 0.61958 0.77255 0.72583 0.66150 22 3.69862 4.99143 5.65117 5.08388 3.93859 5.02484 5.43569 2.28182 4.92979 2.22390 0.81947 5.16941 5.29303 5.04457 4.97831 4.37449 3.09844 1.73671 5.80750 4.67889 25 m - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00785 5.24690 5.96924 0.61958 0.77255 0.72583 0.66150 23 4.97271 6.56164 5.23879 4.77450 6.31867 5.06337 5.40374 5.96016 0.11229 5.26470 6.28692 5.08092 5.57895 4.62358 3.77500 5.02087 5.18628 5.63583 6.89014 6.04366 26 K - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00785 5.24690 5.96924 0.61958 0.77255 0.36047 1.19517 24 2.54666 5.14549 4.47854 4.39441 5.81850 0.49059 5.56440 5.32923 4.71387 4.97401 5.72969 3.04234 4.69525 4.86240 4.98216 1.97191 3.74137 4.47828 7.11922 5.96949 27 G - - - 2.68576 4.42248 2.77542 2.73146 3.46280 2.40455 3.72517 3.29377 2.67764 2.69378 4.24713 2.90370 2.73763 3.18169 2.89824 2.37819 2.77542 2.98541 4.58500 3.61526 0.34334 1.35903 3.39054 0.49454 0.94122 0.48576 0.95510 25 3.72990 6.10555 3.15043 2.71718 5.66275 0.53604 4.63643 5.15583 3.46811 4.63893 5.49273 2.46465 4.70356 3.80522 3.18069 3.66772 4.04726 4.69909 6.76273 5.34894 31 G - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00754 5.28756 6.00991 0.61958 0.77255 0.42020 1.06979 26 3.03474 5.47889 3.29796 2.75103 3.98383 2.70211 3.31916 4.27239 2.30123 3.77893 4.53321 1.50173 4.20987 3.11554 3.24135 1.84556 2.74908 3.86073 5.93254 4.53809 32 n - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 27 3.74417 5.07478 5.38609 4.89524 1.06829 2.74925 4.47081 3.54994 4.70380 2.32811 4.20781 4.75482 5.13261 4.74984 4.71099 3.16454 3.97160 3.37945 2.69504 1.63973 33 f - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 28 3.44263 6.01066 2.35958 2.44848 5.33843 0.92280 4.33183 4.84771 3.20240 4.31726 5.09578 2.46003 4.47194 3.45969 3.21176 2.43711 3.70066 4.39996 6.45486 4.98951 34 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 29 3.44316 5.93935 2.71559 2.49098 5.31375 0.79334 4.35941 4.80821 3.20842 4.29393 5.08167 3.44848 4.49087 3.49226 2.56217 2.50307 3.70913 4.36895 6.43887 4.99731 35 g - - - 2.68634 4.42241 2.77535 2.73139 3.46369 2.40490 3.72510 3.29370 2.67756 2.69370 4.24705 2.90362 2.73687 3.18162 2.89736 2.37865 2.77535 2.98534 4.58492 3.61519 0.37206 1.26560 3.55368 0.07416 2.63835 0.48576 0.95510 30 3.88942 5.95302 4.23675 3.63598 4.71831 4.48035 4.39858 4.77828 2.75469 4.19403 5.09854 2.24160 4.86606 3.60645 0.59424 3.88359 4.06536 4.46904 5.91778 2.72809 37 R - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00750 5.29279 6.01513 0.61958 0.77255 0.42957 1.05208 31 3.02875 5.46006 3.30809 2.75290 4.77564 3.15534 3.27128 3.11680 2.46351 3.75262 4.51035 2.03286 4.20677 3.11160 2.87617 1.44806 2.56127 3.83514 5.91186 4.52178 38 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 32 3.05660 5.00420 3.69687 3.15216 3.11918 3.02851 4.24078 3.63248 3.13747 3.30253 2.61483 2.71463 3.29902 3.46651 3.55556 1.07615 3.31183 3.35603 5.61481 4.33658 39 s - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 33 2.57589 3.63919 2.95238 2.66553 4.52033 0.93789 4.30549 3.91083 3.17329 3.56285 4.40056 3.60001 4.38081 3.49603 3.61607 3.19083 3.38546 2.63223 5.84396 4.54190 40 g - - - 2.68595 4.42235 2.77529 2.73133 3.46363 2.40509 3.72504 3.29312 2.67750 2.69364 4.24699 2.90356 2.73749 3.18156 2.89767 2.37875 2.77529 2.98528 4.58486 3.61513 0.19563 1.74123 6.04172 0.11203 2.24446 0.48576 0.95510 34 3.31457 5.30174 3.77322 3.45523 4.81880 2.21734 4.63307 4.24546 3.45279 2.57493 4.74971 3.87224 0.77142 2.94007 3.80657 3.42819 3.65928 3.89708 6.14453 4.86485 42 p - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00730 5.31938 6.04172 0.61958 0.77255 0.48576 0.95510 35 3.32610 3.38408 3.50819 3.81193 2.90581 2.44831 3.36685 3.41754 3.75449 3.10342 4.04226 4.11237 4.69026 4.00579 4.03914 3.58752 3.56053 3.21184 5.02279 0.86877 43 y - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02852 5.31938 3.76273 0.61958 0.77255 0.48576 0.95510 36 3.18966 5.25183 4.04384 3.66044 5.36659 0.75345 4.81380 4.82830 3.56524 4.39924 5.18175 3.98273 2.96012 3.99033 2.19206 2.08438 3.62255 4.24051 6.54929 5.28941 44 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00746 5.29832 6.02066 0.61958 0.77255 0.56355 0.84208 37 3.09801 3.59594 3.80091 3.24885 4.50359 0.87902 4.33086 3.89601 2.65160 3.54185 4.38440 3.68455 4.40214 3.52972 2.77553 2.69481 3.38817 2.98328 5.81762 4.54346 45 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00746 5.29832 6.02066 0.61958 0.77255 0.56355 0.84208 38 3.41288 5.82347 2.75174 2.94843 5.26122 0.70906 4.35502 4.73480 2.63573 4.23019 5.02471 3.49377 4.49143 3.48985 2.94652 2.74514 3.68361 4.30351 6.37251 4.97224 46 g - - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00502 5.29588 * 0.61958 0.77255 0.00000 * //