Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
0  structures 128  species 0  interactions 128  sequences 4  architectures

Family: DUF3484 (PF11983)

Summary: Membrane-attachment and polymerisation-promoting switch

Pfam includes annotations and additional family information from a range of different sources. These sources can be accessed via the tabs below.

This is the Wikipedia entry entitled "FtsA". More...

FtsA Edit Wikipedia article

Cell division protein FtsA
FtsA-GFP.jpg
E. coli cells producing FtsA-GFP, which localizes to the cell division site.
Identifiers
OrganismEscherichia coli (strain K12)
SymbolFtsA
Entrez944778
RefSeq (Prot)NP_414636.1
UniProtP0ABH0
Other data
ChromosomeGenome: 0.1 - 0.11 Mb
FtsA
Identifiers
SymbolFtsA
InterProIPR020823
SHS2 "1C" domain inserted in FtsA
Identifiers
SymbolSHS2_FtsA
PfamPF02491
InterProIPR003494
SMARTSM00842

FtsA is a bacterial protein that is related to actin by overall structural similarity and in its ATP binding pocket.[1][2][3]

Along with other bacterial actin homologs such as MreB, ParM, and MamK, these proteins suggest that eukaryotic actin has a common ancestry. Like the other bacterial actins, FtsA binds ATP and can form actin-like filaments.[4] The FtsA-FtsA interface has been defined by structural as well as genetic analysis.[5] Although present in many diverse Gram-positive and Gram-negative species, FtsA is absent in actinobacteria and cyanobacteria. FtsA also is structurally similar to PilM, a type IV pilus ATPase.[6]

Function

FtsA is required for proper cytokinesis in bacteria such as Escherichia coli, Caulobacter crescentus, and Bacillus subtilis. Originally isolated in a screen for E. coli cells that could divide at 30ËšC but not at 40ËšC[7], FtsA stands for "filamentous temperature sensitive A". Many thermosensitive alleles of E. coli ftsA exist, and all map in or near the ATP binding pocket. Suppressors that restore normal function map either to the binding pocket or to the FtsA-FtsA interface.[8]

FtsA localizes to the cytokinetic ring formed by FtsZ (Z ring). One of FtsA's functions in cytokinesis is to tether FtsZ polymers to the cytoplasmic membrane via a conserved C-terminal amphipathic helix, forming an "A ring" in the process.[9] Another essential division protein, ZipA, also tethers the Z ring to the membrane and exhibits overlapping function with FtsA. FtsZ, FtsA and ZipA together are called the proto-ring because they are involved in a specific initial phase of cytokinesis.[10] Removal of this helix results in the formation of very long and stable polymer bundles of FtsA in the cell that do not function in cytokinesis.[5] Another subdomain of FtsA (2B) is required for interactions with FtsZ, via the conserved C-terminus of FtsZ.[4] Other FtsZ regulators including MinC and ZipA bind to the same C terminus of FtsZ. Finally, subdomain 1C, which is in a unique position relative to MreB and actin, is required for FtsA to recruit downstream cell division proteins such as FtsN.[11][12]

Although FtsA is essential for viability in E. coli, it can be deleted in B. subtilis. B. subtilis cells lacking FtsA divide poorly, but still survive. Another FtsZ-interacting protein, SepF (originally named YlmF; O31728), is able to replace FtsA in B. subtilis, suggesting that SepF and FtsA have overlapping functions.[13]

An allele of FtsA called FtsA* (R286W) is able to bypass the normal requirement for the ZipA in E. coli cytokinesis.[14] FtsA* also causes cells to divide at a shorter cell length than normal, suggesting that FtsA may normally receive signals from the septum synthesis machinery to regulate when cytokinesis can proceed.[15] Other FtsA*-like alleles have been found, and they mostly decrease FtsA-FtsA interactions.[5] Oligomeric state of FtsA is likely important for regulating its activity, its ability to recruit the later cell division proteins [5] and its ability to bind ATP.[8] Other cell division proteins of E. coli, including FtsN and the ABC transporter homologs FtsEX, seem to regulate septum constriction by signaling through FtsA,[16][17] and the FtsQLB subcomplex is also involved in promoting FtsN-mediated septal constriction.[18][19]

FtsA binds directly to the conserved C-terminal domain of FtsZ.[20][4] This FtsA-FtsZ interaction is likely involved in regulating FtsZ polymer dynamics. In vitro, E. coli FtsA disassembles FtsZ polymers in the presence of ATP, both in solution, as FtsA* [21] and on supported lipid bilayers.[22] E. coli FtsA itself does not assemble into detectable structures except when on membranes, where it forms dodecameric minirings that often pack in clusters and bind to single FtsZ protofilaments.[23] In contrast, FtsA* forms arcs on lipid membranes but rarely closed minirings, supporting genetic evidence that this mutant has a weaker FtsA-FtsA interface.[5] FtsA from Streptococcus pneumoniae forms helical filaments in the presence of ATP,[24] but no interactions with FtsZ have been reported yet. FtsA from Staphylococcus aureus forms actin-like filaments similar to those of FtsA from Thermotoga maritima.[25] In addition, S. aureus FtsA enhances the GTPase activity of FtsZ. In a liposome system, FtsA* stimulates FtsZ to form rings that can divide liposomes, mimicking cytokinesis in vitro.[26]

Structure

The crystal structure for FtsA is known. Compared to MreB and eukaryotic actin, the subdomains are rearranged, and the 1B domain is swapped out for the SHS2 "1C" insert.[4][25][1][27]

References

  1. ^ a b van den Ent F, Löwe J (Oct 2000). "Crystal structure of the cell division protein FtsA from Thermotoga maritima". The EMBO Journal. 19 (20): 5300–7. doi:10.1093/emboj/19.20.5300. PMC 313995. PMID 11032797.
  2. ^ Gunning PW, Ghoshdastider U, Whitaker S, Popp D, Robinson RC (Jun 2015). "The evolution of compositionally and functionally distinct actin filaments". Journal of Cell Science. 128 (11): 2009–19. doi:10.1242/jcs.165563. PMID 25788699.
  3. ^ Ghoshdastider U, Jiang S, Popp D, Robinson RC (Jul 2015). "In search of the primordial actin filament". Proceedings of the National Academy of Sciences of the United States of America. 112 (30): 9150–1. doi:10.1073/pnas.1511568112. PMC 4522752. PMID 26178194.
  4. ^ a b c d Szwedziak P, Wang Q, Freund SM, Löwe J (May 2012). "FtsA forms actin-like protofilaments". The EMBO Journal. 31 (10): 2249–60. doi:10.1038/emboj.2012.76. PMC 3364754. PMID 22473211.
  5. ^ a b c d e Pichoff S, Shen B, Sullivan B, Lutkenhaus J (Jan 2012). "FtsA mutants impaired for self-interaction bypass ZipA suggesting a model in which FtsA's self-interaction competes with its ability to recruit downstream division proteins". Molecular Microbiology. 83 (1): 151–67. doi:10.1111/j.1365-2958.2011.07923.x. PMC 3245357. PMID 22111832.
  6. ^ Karuppiah V, Derrick JP (Jul 2011). "Structure of the PilM-PilN inner membrane type IV pilus biogenesis complex from Thermus thermophilus". The Journal of Biological Chemistry. 286 (27): 24434–42. doi:10.1074/jbc.M111.243535. PMC 3129222. PMID 21596754.
  7. ^ Kohiyama M, Cousin D, Ryter A, Jacob F (April 1966). "Mutants thermosensibles d'Escherichia coli K12". Annales de l'Institute Pasteur. 110 (4): 465–86.
  8. ^ a b Herricks JR, Nguyen D, Margolin W (Nov 2014). "A thermosensitive defect in the ATP binding pocket of FtsA can be suppressed by allosteric changes in the dimer interface". Molecular Microbiology. 94 (3): 713–27. doi:10.1111/mmi.12790. PMC 4213309. PMID 25213228.
  9. ^ Pichoff S, Lutkenhaus J (Mar 2005). "Tethering the Z ring to the membrane through a conserved membrane targeting sequence in FtsA". Molecular Microbiology. 55 (6): 1722–34. doi:10.1111/j.1365-2958.2005.04522.x. PMID 15752196.
  10. ^ Rico AI, Krupka M, Vicente M (Jul 2013). "In the beginning, Escherichia coli assembled the proto-ring: an initial phase of division". The Journal of Biological Chemistry. 288 (29): 20830–6. doi:10.1074/jbc.R113.479519. PMC 3774354. PMID 23740256.
  11. ^ Rico AI, García-Ovalle M, Mingorance J, Vicente M (Sep 2004). "Role of two essential domains of Escherichia coli FtsA in localization and progression of the division ring". Molecular Microbiology. 53 (5): 1359–71. doi:10.1111/j.1365-2958.2004.04245.x. PMID 15387815.
  12. ^ Busiek KK, Eraso JM, Wang Y, Margolin W (Apr 2012). "The early divisome protein FtsA interacts directly through its 1c subdomain with the cytoplasmic domain of the late divisome protein FtsN". Journal of Bacteriology. 194 (8): 1989–2000. doi:10.1128/JB.06683-11. PMC 3318488. PMID 22328664.
  13. ^ Ishikawa S, Kawai Y, Hiramatsu K, Kuwano M, Ogasawara N (Jun 2006). "A new FtsZ-interacting protein, YlmF, complements the activity of FtsA during progression of cell division in Bacillus subtilis". Molecular Microbiology. 60 (6): 1364–80. doi:10.1111/j.1365-2958.2006.05184.x. PMID 16796675.
  14. ^ Geissler B, Elraheb D, Margolin W (Apr 2003). "A gain-of-function mutation in ftsA bypasses the requirement for the essential cell division gene zipA in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 100 (7): 4197–202. doi:10.1073/pnas.0635003100. PMC 153070. PMID 12634424.
  15. ^ Geissler B, Shiomi D, Margolin W (Mar 2007). "The ftsA* gain-of-function allele of Escherichia coli and its effects on the stability and dynamics of the Z ring". Microbiology. 153 (Pt 3): 814–25. doi:10.1099/mic.0.2006/001834-0. PMC 4757590. PMID 17322202.
  16. ^ Du S, Pichoff S, Lutkenhaus J (Aug 2016). "FtsEX acts on FtsA to regulate divisome assembly and activity". Proc Natl Acad Sci USA. 113 (34): 5052–5061. doi:10.1073/pnas.1606656113. PMC 5003251. PMID 27503875.
  17. ^ Pichoff S, Du S, Lutkenhaus J (Mar 2015). "The bypass of ZipA by overexpression of FtsN requires a previously unknown conserved FtsN motif essential for FtsA-FtsN interaction supporting a model in which FtsA monomers recruit late cell division proteins to the Z ring". Molecular Microbiology. 95 (6): 971–987. doi:10.1111/mmi.12907. PMC 4364298. PMID 25496259.
  18. ^ Tsang MJ, Bernhardt TG (Mar 2015). "A role for the FtsQLB complex in cytokinetic ring activation revealed by an ftsL allele that accelerates division". Molecular Microbiology. 95 (6): 924–944. doi:10.1111/mmi.12905. PMC 4414402. PMID 25496050.
  19. ^ Liu B, Persons L, Lee L, de Boer P (Mar 2015). "Roles for both FtsA and the FtsBLQ subcomplex in FtsN-stimulated cell constriction in Escherichia coli". Molecular Microbiology. 95 (6): 945–970. doi:10.1111/mmi.12906. PMC 4428282. PMID 25496160.
  20. ^ Pichoff S, Lutkenhaus J (2002). "Unique and overlapping roles for ZipA and FtsA in septal ring assembly in Escherichia coli". EMBO Journal. 21 (4): 685–93. doi:10.1093/emboj/21.4.685. PMC 125861. PMID 11847116.
  21. ^ Beuria TK, Mullapudi S, Mileykovskaya E, Sadasivam M, Dowhan W, Margolin W (May 2009). "Adenine nucleotide-dependent regulation of assembly of bacterial tubulin-like FtsZ by a hypermorph of bacterial actin-like FtsA". The Journal of Biological Chemistry. 284 (21): 14079–86. doi:10.1074/jbc.M808872200. PMC 2682856. PMID 19297332.
  22. ^ Loose M, Mitchison TJ (Jan 2014). "The bacterial cell division proteins FtsA and FtsZ self-organize into dynamic cytoskeletal patterns". Nature Cell Biology. 16 (1): 38–46. doi:10.1038/ncb2885. PMC 4019675. PMID 24316672.
  23. ^ Krupka, Marcin; Rowlett, Veronica W.; Morado, Dustin; Vitrac, Heidi; Schoenemann, Kara; Liu, Jun; Margolin, William (2017-07-11). "Escherichia coli FtsA forms lipid-bound minirings that antagonize lateral interactions between FtsZ protofilaments". Nature Communications. 8: 15957. doi:10.1038/ncomms15957. ISSN 2041-1723. PMC 5508204. PMID 28695917.
  24. ^ Lara B, Rico AI, Petruzzelli S, Santona A, Dumas J, Biton J, Vicente M, Mingorance J, Massidda O (2005). "Cell division in cocci: localization and properties of the Streptococcus pneumoniae FtsA protein" (PDF). Molecular Microbiology. 55 (3): 699–711. doi:10.1111/j.1365-2958.2004.04432.x. PMID 15660997.
  25. ^ a b Fujita J, Maeda Y, Nagao C, Tsuchiya Y, Miyazaki Y, Hirose M, Mizohata E, Matsumoto Y, Inoue T, Mizuguchi K, Matsumura H (May 2014). "Crystal structure of FtsA from Staphylococcus aureus". FEBS Letters. 588 (10): 1879–85. doi:10.1016/j.febslet.2014.04.008. PMID 24746687.
  26. ^ Osawa M, Erickson HP (2013). "Liposome division by a simple bacterial division machinery". Proceedings of the National Academy of Sciences of the United States of America. 110 (27): 11000–4. doi:10.1073/pnas.1222254110. PMC 3703997. PMID 23776220.
  27. ^ Anantharaman, V; Aravind, L (1 September 2004). "The SHS2 module is a common structural theme in functionally diverse protein groups, like Rpb7p, FtsA, GyrI, and MTH1598/TM1083 superfamilies". Proteins. 56 (4): 795–807. doi:10.1002/prot.20140. PMID 15281131.

This page is based on a Wikipedia article. The text is available under the Creative Commons Attribution/Share-Alike License.

"DUF" families are annotated with the Domain of unknown function Wikipedia article. This is a general article, with no specific information about individual Pfam DUFs. If you have information about this particular DUF, please let us know using the "Add annotation" button below.

Membrane-attachment and polymerisation-promoting switch Provide feedback

This family is the C-terminal region of essential streptococcal FtsA proteins and their homologues. It acts as an intra-molecular switch, triggered by ATP, to promote polymerisation of the whole protein and to attach it to the membrane. FtsA is essential for the formation of the septum that divides fully-grown cells into two daughter cells at cell-division. FtsA anchors the constricting FtsZ ring to the membrane [1].

Literature references

  1. Krupka M, Cabre EJ, Jimenez M, Rivas G, Rico AI, Vicente M;, MBio. 2014;5:e02221.: Role of the FtsA C terminus as a switch for polymerization and membrane association. PUBMED:25425238 EPMC:25425238


This tab holds annotation information from the InterPro database.

InterPro entry IPR021873

FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains [PUBMED:9352931].

This C-terminal domain is found in FtsA from Firmicutes (Gram-positive bacteria). It acts as an intra-molecular switch, triggered by ATP, to promote polymerisation of the whole protein and to attach it to the membrane [PUBMED:25425238].

Domain organisation

Below is a listing of the unique domain organisations or architectures in which this domain is found. More...

Loading domain graphics...

Alignments

We store a range of different sequence alignments for families. As well as the seed alignment from which the family is built, we provide the full alignment, generated by searching the sequence database (reference proteomes) using the family HMM. We also generate alignments using four representative proteomes (RP) sets, the UniProtKB sequence database, the NCBI sequence database, and our metagenomics sequence database. More...

View options

We make a range of alignments for each Pfam-A family. You can see a description of each above. You can view these alignments in various ways but please note that some types of alignment are never generated while others may not be available for all families, most commonly because the alignments are too large to handle.

  Seed
(21)
Full
(128)
Representative proteomes UniProt
(1081)
NCBI
(1034)
Meta
(0)
RP15
(11)
RP35
(62)
RP55
(117)
RP75
(284)
Jalview View  View  View  View  View  View  View  View   
HTML View  View               
PP/heatmap 1 View               

1Cannot generate PP/Heatmap alignments for seeds; no PP data available

Key: ✓ available, x not generated, not available.

Format an alignment

  Seed
(21)
Full
(128)
Representative proteomes UniProt
(1081)
NCBI
(1034)
Meta
(0)
RP15
(11)
RP35
(62)
RP55
(117)
RP75
(284)
Alignment:
Format:
Order:
Sequence:
Gaps:
Download/view:

Download options

We make all of our alignments available in Stockholm format. You can download them here as raw, plain text files or as gzip-compressed files.

  Seed
(21)
Full
(128)
Representative proteomes UniProt
(1081)
NCBI
(1034)
Meta
(0)
RP15
(11)
RP35
(62)
RP55
(117)
RP75
(284)
Raw Stockholm Download   Download   Download   Download   Download   Download   Download   Download    
Gzipped Download   Download   Download   Download   Download   Download   Download   Download    

You can also download a FASTA format file containing the full-length sequences for all sequences in the full alignment.

HMM logo

HMM logos is one way of visualising profile HMMs. Logos provide a quick overview of the properties of an HMM in a graphical form. You can see a more detailed description of HMM logos and find out how you can interpret them here. More...

Trees

This page displays the phylogenetic tree for this family's seed alignment. We use FastTree to calculate neighbour join trees with a local bootstrap based on 100 resamples (shown next to the tree nodes). FastTree calculates approximately-maximum-likelihood phylogenetic trees from our seed alignment.

Note: You can also download the data file for the tree.

Curation and family details

This section shows the detailed information about the Pfam family. You can see the definitions of many of the terms in this section in the glossary and a fuller explanation of the scoring system that we use in the scores section of the help pages.

Curation View help on the curation process

Seed source: PFAM-B_3216 (release 23.0)
Previous IDs: none
Type: Family
Sequence Ontology: SO:0100021
Author: Assefa S , Coggill P , Bateman A
Number in seed: 21
Number in full: 128
Average length of the domain: 72.60 aa
Average identity of full alignment: 26 %
Average coverage of the sequence by the domain: 16.36 %

HMM information View help on HMM parameters

HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 45638612 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 27.4 27.4
Trusted cut-off 27.4 27.8
Noise cut-off 27.3 27.2
Model length: 67
Family (HMM) version: 8
Download: download the raw HMM for this family

Species distribution

Sunburst controls

Hide

Weight segments by...


Change the size of the sunburst

Small
Large

Colour assignments

Archea Archea Eukaryota Eukaryota
Bacteria Bacteria Other sequences Other sequences
Viruses Viruses Unclassified Unclassified
Viroids Viroids Unclassified sequence Unclassified sequence

Selections

Align selected sequences to HMM

Generate a FASTA-format file

Clear selection

This visualisation provides a simple graphical representation of the distribution of this family across species. You can find the original interactive tree in the adjacent tab. More...

Loading sunburst data...

Tree controls

Hide

The tree shows the occurrence of this domain across different species. More...

Loading...

Please note: for large trees this can take some time. While the tree is loading, you can safely switch away from this tab but if you browse away from the family page entirely, the tree will not be loaded.