# STOCKHOLM 1.0 #=GF ID TraD_N #=GF AC PF12615.9 #=GF DE F sex factor protein N terminal #=GF AU Gavin OL; #=GF SE Prosite #=GF GA 25.00 25.00; #=GF TC 26.40 26.60; #=GF NC 24.90 24.00; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 2680768 #=GF RT Nucleotide sequence of the traD region in the Escherichia coli F #=GF RT sex factor. #=GF RA Jalajakumari MB, Manning PA; #=GF RL Gene. 1989;81:195-202. #=GF DR INTERPRO; IPR022585; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC This domain family is found in bacteria, and is typically #=GF CC between 96 and 107 amino acids in length. The family is found in #=GF CC association with Pfam:PF10412. TraD is a cytoplasmic membrane #=GF CC protein with possible DNA binding domains. It is part of the #=GF CC bacterial F sex factor complex. #=GF SQ 41 #=GS A0A1I5BAE3_9ENTR/31-128 AC A0A1I5BAE3.1 #=GS Q93GL8_SALTY/31-128 AC Q93GL8.1 #=GS A0A2X2PZZ2_RAOPL/31-128 AC A0A2X2PZZ2.1 #=GS A0A378JR59_9GAMM/33-126 AC A0A378JR59.1 #=GS A0A378BVW9_KLEPR/31-128 AC A0A378BVW9.1 #=GS D3HTT7_LEGLN/35-130 AC D3HTT7.1 #=GS A0A0W0SLA7_9GAMM/33-126 AC A0A0W0SLA7.1 #=GS Q7MBL9_VIBVY/39-134 AC Q7MBL9.1 #=GS A0A0W0RZF4_9GAMM/33-126 AC A0A0W0RZF4.1 #=GS A0A1E7YYN0_9GAMM/31-128 AC A0A1E7YYN0.1 #=GS A0A378K9U5_9GAMM/33-126 AC A0A378K9U5.1 #=GS A0A077ZG65_TRITR/31-128 AC A0A077ZG65.1 #=GS A0A085FZ03_9ENTR/31-136 AC A0A085FZ03.1 #=GS A0A3S1D2T5_9GAMM/11-104 AC A0A3S1D2T5.1 #=GS A0A377YVY0_KLEPO/31-128 AC A0A377YVY0.1 #=GS A6TIJ1_KLEP7/31-128 AC A6TIJ1.1 #=GS A4WGU5_ENT38/18-123 AC A4WGU5.1 #=GS A0A2V1HBW5_9GAMM/31-127 AC A0A2V1HBW5.1 #=GS A0A1E5CSE4_9VIBR/36-130 AC A0A1E5CSE4.1 #=GS H8K2H5_RICAG/27-136 AC H8K2H5.1 #=GS A0A098GBG9_9GAMM/35-130 AC A0A098GBG9.1 #=GS D8MK71_ERWBE/31-135 AC D8MK71.1 #=GS A5CC23_ORITB/29-137 AC A5CC23.1 #=GS A0A0W0WRR6_9GAMM/33-126 AC A0A0W0WRR6.1 #=GS A0A0J8YDS2_9GAMM/31-136 AC A0A0J8YDS2.1 #=GS Q6LW78_PHOPR/34-128 AC Q6LW78.1 #=GS A0A0W0XSR1_9GAMM/31-126 AC A0A0W0XSR1.1 #=GS A0A378KEL8_9GAMM/33-126 AC A0A378KEL8.1 #=GS D3HTG8_LEGLN/33-126 AC D3HTG8.1 #=GS A0A2A2GQD2_9GAMM/31-128 AC A0A2A2GQD2.1 #=GS A0A2X2PX13_RAOPL/31-128 AC A0A2X2PX13.1 #=GS W1EBN3_KLEPN/31-128 AC W1EBN3.1 #=GS A0A0M2K3W1_9GAMM/31-128 AC A0A0M2K3W1.1 #=GS A0A2N8ZI97_9VIBR/36-130 AC A0A2N8ZI97.1 #=GS A0A0J8Y9G8_9ENTR/31-136 AC A0A0J8Y9G8.1 #=GS W1DNB1_KLEPN/11-108 AC W1DNB1.1 #=GS A0A2N8ZNP2_9VIBR/36-131 AC A0A2N8ZNP2.1 #=GS W0BF53_9GAMM/33-126 AC W0BF53.1 #=GS D4EA28_SEROD/31-128 AC D4EA28.1 #=GS A0A0H3GZJ9_KLEPH/31-128 AC A0A0H3GZJ9.1 #=GS A0A078KYH4_9GAMM/33-126 AC A0A078KYH4.1 A0A1I5BAE3_9ENTR/31-128 ..YYVFLGWLGLLSFIVYIRLNTQTFLNGLVY.......WWSHTLIPFGSIIRK...PPVYPVry......ygNTLYYTYDKILTDKYTAWCGITLR.................NELILSGLFA..SIITFIVV-i... Q93GL8_SALTY/31-128 ..YCLFIFFWILVGLVLWVKLSWQTFVNGGIY.......WWCTTLEGMRDLIKS...QPVYEIry......ygQTFRMNAAQVLQDKYTVWCGEQLW.................SAFVLAACVA..LVICLITFF.... A0A2X2PZZ2_RAOPL/31-128 ..YVLFILFWVLCGLMLMYRLSWQTFVNGCVY.......WWCTTLAPMRDIIRS...QPVYTIsy......ygKSLEYNAEQILADKYTIWCGEQLW.................TAFVFAAIVS..LTICVVTFF.... A0A378JR59_9GAMM/33-126 li--CLFLWIIFTAFLTWLFIPLEKITHTAAF.......----YYAHFLRVVGQ...NHIFELsf......hgKTYKQTVDSILHYPYYQDTANQVI.................NSLGKSAFWA..FCFSFILG-l... A0A378BVW9_KLEPR/31-128 ..YVLFILFWVLCGLMLMYRLSWQTFVNGCVY.......WWCTTLGPMRDIIRS...QPVYTIqy......ygQSLEYTSEQILADKYTIWCGEQLW.................TSFVFAAVVS..LVICIVTFF.... D3HTT7_LEGLN/35-130 ..HWAVLGFVVLFSLIMAFYASSELKLVVLHHisrflvkFHNGEYVLWTNLNGSkitAFFYQK..........--------SPLIQASVHLAQETLW.................RKAQISLIFG..GAVYLLITL.... A0A0W0SLA7_9GAMM/33-126 .f-FCLFLWIVFTSLITWCVSSYEQVQQALAY.......YA----ACFFNLLGQ...KHDFTLpf......hgKNYHQTVESLLHFPYFKSNANHMI.................DSIGKSALAG..FFLAFFLG-i... Q7MBL9_VIBVY/39-134 ..YAAIWAVIALTGFLTWLRAPDNAFWSVFYY.......WRNQLYANLGHDLNSe.vTTFWNG..........KRYVGTLASQLENTQLITLYDNVI.................RQAQINFLIA..LAIAFAILM.... A0A0W0RZF4_9GAMM/33-126 .w-VCLFLWVVLTGLITWLVTSPEKFHQAIAY.......----YYASFLNLVKQ...KHTFTLpf......hgKNYQQSVDTILHYPYYKENANHIV.................DLLGKSSLAA..FVLSFVLGL.... A0A1E7YYN0_9GAMM/31-128 ..YCLVILFGVIVALTLTVKLSWQTFVNGMVW.......YWCQTLAPMRDIFRS...QPVYTIry......ygHELKYNAQQILQDKYIQWCADQVW.................TAFILAAIIA..AVVCVITFF.... A0A378K9U5_9GAMM/33-126 vi--CLFMWVIFTVLFVWFIIPLERITHAVAF.......----YGAQFLEFLGQ...KHTFELsf......hgKAYQQTVNSILHYAYYQDNAIHVI.................HSLGKSAFWA..FCLSLTLG-l... A0A077ZG65_TRITR/31-128 ..YCLFIFFWILVGLVLWVKISWQTFVNGCIY.......WWCTTLEGMRDLIRS...QPVYEIqy......ygKTFRMNAAQVLHDKYMIWCGEQLW.................SAFVLATVVA..LVICLITFF.... A0A085FZ03_9ENTR/31-136 ..FWIFILFAVLASAIFLWRIPQETLDNGSLW.......WFAWMNSSFFELMPAs.aPKLYDIhywyaptqtvMVLKMTVVQIFTDPYMTAMGEQFL.................DYLQWAGLGS..GVFSLAVFM.... A0A3S1D2T5_9GAMM/11-104 .f-ICLFLWLVFTGVIAFWVTSYEQLHQAIAY.......----YYALFLNLVGQ...KHTFTVpf......hgKEYRQSVESILHYSYFKSNADHTV.................TLLGRSALAG..FFIAFFLG-i... A0A377YVY0_KLEPO/31-128 ..YCLFIFFWILVGLILWVKISWQTFVNGCIY.......WWCTTLEGMRDLIKS...QPVYEIqy......ygKTFQMNAAQVLHDKYMIWCGEQLW.................SAFVLASVVA..LVICLITFF.... A6TIJ1_KLEP7/31-128 ..YVLFILFWVLCGLMLMYRLSWQTFVNGCVY.......WWCTTLGPMRDIIRS...QPVYTIqy......ygQSLEYTSEQILADKYTIWCGEQLW.................TGFAFAAVVS..LVICIVTFF.... A4WGU5_ENT38/18-123 ..FWIFILFAVLASAIFFWRIPQETLDNGSLW.......WFAWMNSSFIDLMPAs.aPKLYDIhywyaptqtpMVLKMTLAQIFTDPYMTAMGDQVL.................SELQWAGLAS..GVFSMAVFL.... A0A2V1HBW5_9GAMM/31-127 ..YCVFLLFGVVIVVTLLMRLSWQNFENGLIY.......WWCYLVEGFPTVSPA...QSIYHLny......ygKTLRYTGQQILVDEYTTYCGELVR.................REFIFAAILG..VVVCVIT--a... A0A1E5CSE4_9VIBR/36-130 gi---MLGVVGLTVLLTWLRAPDNAALSIFYF.......WRNKIYEGLGKPIDSt.vTTFWSG..........QRYVGTLESQLNNKVLIELYDNTL.................FQAQVNFLVA..MAIGFITL-v... H8K2H5_RICAG/27-136 .i-NALTIGLIFTVVWLMWRIYQKLSLVSLYY.......FIIERYAGLKLAIGE...-HFYPT..........NQIGIKFYYLEQKAWVYRNAEEFVhkfwhitphshninqfgQFLLHSAWQE..GIITFTAFM.... A0A098GBG9_9GAMM/35-130 ..HWAVLGFVVLFSLIMAFYASSELKLVVLNHisrflvkFHNGEYVLWTNLNGSkitALFYQK..........--------SPLIQASVHLAQDVLW.................RKAQVSLFFG..GAVYLLITL.... D8MK71_ERWBE/31-135 ..HWMVLLFLVATGGLFWAVTPDDTLRNGFWY.......WSGRLFSGFLPLMDRs.sPATWDIswhc.epaklCTTKLTLAQLLASEWMQVQGAQLL.................QNLKLCAAGC..GTVALALF-c... A5CC23_ORITB/29-137 .a-NVFTIGLGLSIFWIICRLYQKVFLSSLYY.......FAIERYVQLKLTIGE...-HFYDI..........DQIGIVFYSLRFKKWIHLNAQDFLhefytgqh.gfkiqqlwEFLINSALLE..GLIVFAIGV.... A0A0W0WRR6_9GAMM/33-126 .w-VCLFLWVVLTGLITWLVTSPEKFHQAIAY.......----YYASFLNLVKQ...KHTFTLpf......hgKNYQQSVDTILHYPYYKENANHIV.................DLLGKSSLAA..FVLSFVLGL.... A0A0J8YDS2_9GAMM/31-136 .n-WILLLFVLMTGLSFWGITPDDTLRNGFWH.......WTGRMFSSLVPLMNPs.sPATWDIlyhcgdgeqlCRAKLTLAQVIADPWMREMGANLW.................VNLKLCATVS..AVFCSVLF-s... Q6LW78_PHOPR/34-128 .r-WMGYGILLLTALLCFSFIDQDTLKGTYYY.......WRYSMVGKIKPDTHE..vFTLWQG..........VTYKSTLGQQRLNPVFIDANRQFW.................LSLQLYLLAS..LISGLTVF-s... A0A0W0XSR1_9GAMM/31-126 .g-WAIFGFMVLFSLIMIFYAWTELKLFGLNQishilvkAHYEDQVLWTNLNGSkvtAAFYQN..........--------SPIIQSAVRLAKESLI.................SKSKVSLFFG..GAVYLLITL.... A0A378KEL8_9GAMM/33-126 .w-VCLFLWVVLTSLITWLVTPLEKFYQALAY.......----YSSSFLNLIGQ...RHTFNLsf......qgAYYQQTVETILQYPYYKENASHMV.................KLLGQSALAA..FAFSFIFG-f... D3HTG8_LEGLN/33-126 .c-VCLSLWVVLSGLITWLVTSPEKLYQALVY.......----YYAYFLNSVGQ...KHVFIIsf......hgKNYQQNVETILHYPYYRENANHMV.................DLLGKSSLAA..FIVSFVLGL.... A0A2A2GQD2_9GAMM/31-128 ..YCLFVSFWIIAALSMTVQLTWQTFVNGMVY.......WWCKTLVPMYSLFRS...EPVYHLdy......ygQKLHYTPSQILMDRYTVYCGEKVL.................NTFIISGIIA..IIVCVV---glf. A0A2X2PX13_RAOPL/31-128 ..YVLFIIFWVLCGLILMYRLSWQTFVNGCVY.......WWCTTLAPMRDIIRS...QPVYTIny......ygKSLEYNSEQILADKYTIWCGEQLW.................TSFVFAAIVS..LTVCIVTFF.... W1EBN3_KLEPN/31-128 ..YVLFILFWVLCGLMLMYRLSWQTFVNGCVY.......WWCTTLGPMRDIIRS...QPVYTIqy......ygQSLEYTSEQILADKYTIWCGEQLW.................TSFVFAAVVS..LVICIVTFF.... A0A0M2K3W1_9GAMM/31-128 ..YYVFIGWLALLGFILYLRLNTQTFLNGLVY.......WWSHTLIPFGSIIRK...PPVYPVry......ygNILYYTYDKILTDKYTVWCGITLR.................NEIILSGLFA..SIITFTVVM.... A0A2N8ZI97_9VIBR/36-130 .a--AIWSVIALTGLMTWLRAPDNAFWSIFYY.......WRNRLYASLGHDLNSe.vTTLWSG..........KRYVGTLASQLNNTQLINLYDEVI.................QQIQINFLLT..IGLIFVL--wm.. A0A0J8Y9G8_9ENTR/31-136 ..FWILILFIGLGAIIFLLKTPQELLENGAWY.......WFANLNATFADLIPAg.kGKFYDIhyfyapanstLTLKMTLQQMLTDPYMQVMGERFA.................TNLEVAAIAS..GAFSLCVFF.... W1DNB1_KLEPN/11-108 ..YVLFILFWVLCGLMLMYRLSWQTFVNGCVY.......WWCTTLGPMRDIIRS...QPVYTIqy......ygQSLEYTSEQILADKYTIWCGEQLW.................TGFVFAAVVS..LVICIVTFF.... A0A2N8ZNP2_9VIBR/36-131 .a--AIWSVIALTGLMTWFRAPDNAFWSIFYY.......WRNRLYASLGHDLNSe.vTTLWSG..........KRYVGTLASQLNNTQLINLYDEVI.................QQIQINFLLTigLIVV-----lwml W0BF53_9GAMM/33-126 .w-VCLFLWVVLTGLITWLVTSPEKFYQAIAY.......----YYASFLNLVGQ...KHTFTLhf......hgKNYQQNVDVILHYPYYKENATHMV.................DLLGKSSLAA..FVLSFVLGL.... D4EA28_SEROD/31-128 ..YCLFIAFFLVAVSVMMWRVSMQNLTNGMIY.......WWVRMLESWPSVAPS...ESVYHLdy......ygRELVYTGKQVLVDRYVVYCGQLVW.................REALFASGVA..LAACVV---ggi. A0A0H3GZJ9_KLEPH/31-128 ..YVLFILFWVLCGLMLMYRLSWQTFVNGCVY.......WWCTTLGPMRDIIRS...QPVYTIqy......ygQSLEYTSEQILADKYTIWCGEQLW.................TSFVFAAVVS..LVICIVTFF.... A0A078KYH4_9GAMM/33-126 .f-LCLFLWLVFTGIITWWVTSYEQIQQAIAY.......----YYACFLHLVGQ...KQSFTLpf......hgQNYRQTVESLLHYSYFKSNANHMV.................ELLGKSALAG..FALALFLG-l... #=GC seq_cons ...hhhhlahlLsuLlhhhphs.pshhsuhhY.......Whsphhushhsllts...ptsaslpa......aGpshphTspplLtspYhhhsu-plh.................sthhhuulsu..hslshlhhh.... //