# STOCKHOLM 1.0
#=GF ID   TraD_N
#=GF AC   PF12615.9
#=GF DE   F sex factor protein N terminal
#=GF AU   Gavin OL;
#=GF SE   Prosite
#=GF GA   25.00 25.00;
#=GF TC   26.40 26.60;
#=GF NC   24.90 24.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   2680768
#=GF RT   Nucleotide sequence of the traD region in the Escherichia coli F
#=GF RT   sex factor.
#=GF RA   Jalajakumari MB, Manning PA;
#=GF RL   Gene. 1989;81:195-202.
#=GF DR   INTERPRO; IPR022585;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This domain family is found in bacteria, and is typically
#=GF CC   between 96 and 107 amino acids in length. The family is found in
#=GF CC   association with Pfam:PF10412. TraD is a cytoplasmic membrane
#=GF CC   protein with possible DNA binding domains. It is part of the
#=GF CC   bacterial F sex factor complex.
#=GF SQ   8
#=GS W0BF53_9GAMM/34-126  AC W0BF53.1
#=GS A6TIJ1_KLEP7/31-128  AC A6TIJ1.1
#=GS Q93GL8_SALTY/31-128  AC Q93GL8.1
#=GS D8MK71_ERWBE/31-134  AC D8MK71.1
#=GS Q6LW78_PHOPR/35-128  AC Q6LW78.1
#=GS Q7MBL9_VIBVY/39-134  AC Q7MBL9.1
#=GS D3HTT7_LEGLN/35-130  AC D3HTT7.1
#=GS A5CC23_ORITB/30-137  AC A5CC23.1
W0BF53_9GAMM/34-126             .VCLFLWVVLTGLITWLVTSPEKFYQAIAY...........YYASFLNLVGQ...KHTFTLHFHG.....KNYQQNVDVILHYPYYKENATHMV................DLLGKSSLAAFVLSFVLGL
A6TIJ1_KLEP7/31-128             YVLFILFWVLCGLMLMYRLSWQTFVNGCVY.......WWCTTLGPMRDIIRS...QPVYTIQYYG.....QSLEYTSEQILADKYTIWCGEQLW................TGFAFAAVVSLVICIVTFF
Q93GL8_SALTY/31-128             YCLFIFFWILVGLVLWVKLSWQTFVNGGIY.......WWCTTLEGMRDLIKS...QPVYEIRYYG.....QTFRMNAAQVLQDKYTVWCGEQLW................SAFVLAACVALVICLITFF
D8MK71_ERWBE/31-134             HWMVLLFLVATGGLFWAVTPDDTLRNGFWY.......WSGRLFSGFLPLMDR.SSPATWDISWHCEPAKLCTTKLTLAQLLASEWMQVQGAQLL................QNLKLCAAGCGTVALALF.
Q6LW78_PHOPR/35-128             .WMGYGILLLTALLCFSFIDQDTLKGTYYY.......WRYSMVGKIKPDTHE.....VFTL......WQGVTYKSTLGQQRLNPVFIDANRQFW................LSLQLYLLASLISGLTVFS
Q7MBL9_VIBVY/39-134             YAAIWAVIALTGFLTWLRAPDNAFWSVFYY.......WRNQLYANLGHDLNS.EVTTFWNG.........KRYVGTLASQLENTQLITLYDNVI................RQAQINFLIALAIAFAILM
D3HTT7_LEGLN/35-130             HWAVLGFVVLFSLIMAFYASSELKLVVLHHISRFLVKFHNGEYVLWTNLNGSKITAFFYQK.................SPLIQASVHLAQETLW................RKAQISLIFGGAVYLLITL
A5CC23_ORITB/30-137             .NVFTIGLGLSIFWIICRLYQKVFLSSLYY.......FAIERYVQLKLTIGE....HFYDI.........DQIGIVFYSLRFKKWIHLNAQDFLHEFYTGQHGFKIQQLWEFLINSALLEGLIVFAIGV
#=GC seq_cons                   ashhhhallLoGLlhahhhspcsFhsuhaY.......Wtsphaushpsllsp...thsasl.........pshphshsplLtspahhhsucplh................pthtluulsuhllslslhh
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