Summary: Insertion element 4 transposase N-terminal
Insertion element 4 transposase N-terminal Provide feedback
This family represents the N-terminal region of proteins carrying the transposase enzyme, DDE_Tnp_1 (that was Transposase_11), PF01609 at the C-terminus. The full-length members are Insertion Element 4, IS4. Within the collection of E.coli strains, ECOR, the number of IS4 elements varies from zero to 14, with an average of 5 copies/strain .
Dykhuizen DE, Sawyer SA, Green L, Miller RD, Hartl DL;, Genetics. 1985;111:219-231.: Joint distribution of insertion elements IS4 and IS5 in natural isolates of Escherichia coli. PUBMED:2996976 EPMC:2996976
External database links
- the number of sequences which exhibit this architecture
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This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
- the UniProt description of the protein sequence
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We make a range of alignments for each Pfam-A family:
- the curated alignment from which the HMM for the family is built
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Curation and family details
|Number in seed:||36|
|Number in full:||1119|
|Average length of the domain:||88.10 aa|
|Average identity of full alignment:||61 %|
|Average coverage of the sequence by the domain:||26.57 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||2|
|Download:||download the raw HMM for this family|
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