# STOCKHOLM 1.0
#=GF ID   CPSF100_C
#=GF AC   PF13299.7
#=GF DE   Cleavage and polyadenylation factor 2 C-terminal
#=GF AU   Aldam G;0000-0003-3039-8438
#=GF SE   Pfam-B_2065 (release 24.0)
#=GF GA   23.60 23.60;
#=GF TC   23.60 23.60;
#=GF NC   23.20 23.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cut_ga HMM metaseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   19748916
#=GF RT   Unique features of plant cleavage and polyadenylation
#=GF RT   specificity factor revealed by proteomic studies.
#=GF RA   Zhao H, Xing D, Li QQ;
#=GF RL   Plant Physiol. 2009;151:1546-1556.
#=GF DR   INTERPRO; IPR025069;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family lies at the C-terminus of many fungal and plant
#=GF CC   cleavage and polyadenylation specificity factor subunit 2
#=GF CC   proteins. The exact function of the domain is not known, but is
#=GF CC   likely to function as a binding domain for the protein within
#=GF CC   the overall CPSF complex [1].
#=GF SQ   3
#=GS EDG51219.1/475-559 DE [subseq from] hypothetical protein GOS_769072 [marine metagenome]
#=GS ECO21773.1/1-63    DE [subseq from] hypothetical protein GOS_6356168 [marine metagenome]
#=GS ECD60173.1/210-300 DE [subseq from] hypothetical protein GOS_6307926 [marine metagenome]
EDG51219.1/475-559         ---------------------------------------------------------------------------------ALVTTNDAIMKKASS.---QPGSVFLGDLRLSDFRQALAQQGIAAEFAD-GVLVCANgRVTVRKDGE-KLVVEGSLSQDYFDIRQILYSQY
ECO21773.1/1-63            ------------------------------------------------------------------------------------------------.---------VGDMRLSDFKNVLVKAGFTAEFSS-GVLVCNE.TVAVRKGRQG-LQIEGALSNDYYRIRDLLYGQF
ECD60173.1/210-300         IKLTRDLLKRLTWQTVKGLGIVAVTARLGLA-----------SAPTAEPEHQEDEQRSKKKVKL---ETEQAK--RKADEAVSEVVLDVVPSTALTsSTITTQPIHV-------------------------------.---------------------------------
#=GC PP_cons               79**************************933...........2233333333344445555666...233333..334444444478888888887.55599***99**********************9.******9.******999*69******************987
#=GC RF                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
//