Summary: KTSC domain
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This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR025309
This short domain is named after lysine tRNA synthetase C-terminal domain. It is found at the C terminus of some lysyl tRNA synthetases and also as a single domain protein in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown, but it could be an RNA binding domain.
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We make a range of alignments for each Pfam-A family:
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Curation and family details
|Number in seed:||89|
|Number in full:||426|
|Average length of the domain:||59.70 aa|
|Average identity of full alignment:||28 %|
|Average coverage of the sequence by the domain:||54.38 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||1|
|Download:||download the raw HMM for this family|
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