# STOCKHOLM 1.0
#=GF ID   SurA_N_3
#=GF AC   PF13624.1
#=GF DE   SurA N-terminal domain
#=GF AU   Coggill P
#=GF SE   Jackhmmer:O66854
#=GF GA   27.00 27.00;
#=GF TC   27.00 27.00;
#=GF NC   26.90 26.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   12429090
#=GF RT   Crystallographic structure of SurA, a molecular chaperone that
#=GF RT   facilitates folding of outer membrane porins. 
#=GF RA   Bitto E, McKay DB; 
#=GF RL   Structure. 2002;10:1489-1498.
#=GF CC   This domain is found at the N-terminus of the chaperone SurA. It
#=GF CC   is a helical domain of unknown function. The C-terminus of the
#=GF CC   SurA protein folds back and forms part of this domain also but
#=GF CC   is not included in the current alignment.
#=GF SQ   9
#=GS B7TX43_PSEFL/1-165  AC B7TX43.1
#=GS A3EPT2_9BACT/1-171  AC A3EPT2.1
#=GS C6HWQ2_9BACT/1-170  AC C6HWQ2.1
#=GS B5EQ33_ACIF5/1-165  AC B5EQ33.1
#=GS B5YGW7_THEYD/1-157  AC B5YGW7.1
#=GS E6TYN9_BACCJ/1-153  AC E6TYN9.1
#=GS C7MZH2_SACVD/1-146  AC C7MZH2.1
#=GS D3SMV5_THEAH/1-156  AC D3SMV5.1
#=GS B4U8V8_HYDS0/1-151  AC B4U8V8.1
B7TX43_PSEFL/1-165             MLQNIRD..N..S....QGWIAKTIIGIIVALMAFT..GIEAI.FQASGNNK.QDVAKVNGEEITQTELSQ.....AVD....M......QRRQLM......QQLGKDFDASLLDEKL.....LRDA.....ALKGLIDRKLLLQGAADSKFGFSEAALDQVILQTPEFQV.D.GKFNAERFDQVVRQLGYSRLQFRQMLTQEMLIGQVR
A3EPT2_9BACT/1-171             MLEWIRK..V..AVERPK..VLGTLMILVGAIFVVS.MGWWGF.SAYK.SGKPGIVARINGTPLYATEFSR.....DYE....I......MKNNYQRL.LLNGAL.........GKKILTELNFPGL.....VLRNMIFRQLWIDEANHLHLIVPDAVVVSEVSRIPFFQEGNPPVFSSKLYTQFLLETHQSAKDFEQSIREDLLVQRAQ
C6HWQ2_9BACT/1-170             MLEWIRR..E..AVERPK..VIGVLILLTGGIFVLS.MGWWGF.SQSGSSGG.DVVAKVDGVPIKAKDYSR.....DYLIMKDN......YKRLLR......GDL.........GAKI.....LKDLNFPGLVLRNMIYRQLWIDEGKSLGIAVSDKTVVDEIAKIPFFQVGNPPVFSKDAYVTFLKETHQSAQSFERSVRLDVLVQRAQ
B5EQ33_ACIF5/1-165             MMETFRNFGR..S....W..VAKSLMVLIALSFVLW..GVSGYLFSGH.STS.SVVATVDGQKISDAAFQK.....RMKDALAR......YSHIFG......ATT.........AAKMAADRSFGLE.....VLNGLIDNMLLGMEAGRLGLQVPDAALAKKIESIPAFQE.K.GAFSKNLYQKLLAANGMTPAQFEDMLRESMRLEQLQ
B5YGW7_THEYD/1-157             MIKTLRK..N..A....K..YFYFLFFLVIITFVFW..GVGTV.DK...PKV.EYVADVDGQKISAERFWR.....NYE....E......IRRFYREVFKDKAAE.........MEQG.....LKEK.....VLEDLINEEILLWLAKKYEIEATDKEVQDAIVNDPRFMR.N.GIFQRDIYFQILKLNRLNPAQYEASLKREITIGKTI
E6TYN9_BACCJ/1-153             MFKYFKF..N..N....S..IFIISIAVLLIL.ILAPFNKGKM.EEQV.EID.AVVATVNGENIIYKDVIKVKNSMRLK....K......YNDLTN......N...........NEDK.....LTEA.....AIEQRIIHRLLIQEAQRLNIEVSDEEVAIQLQLIKEV......LPSDLTLEESLILQNYTEDALLAEIKEQLMIERLL
C7MZH2_SACVD/1-146             MIRTIRR..YPSR....R..SFGVVLTAVTALL.LA.....SC.GSDP.AQA.RSAAVVGDHVIQLDEVQA.....EVR....WLLDHAPQAQQAR......EQR.........RIDQ.....ISSE.....IVRSRVVHELLAVAEERENLRVDETKVDELIEA.....S.G.G......VEEAARNIAVEPSRVRDVARDQLLLEQLG
D3SMV5_THEAH/1-156             MFSFIQR..H..R....K..FLVVTVSVVSFAFFLWLFLAGSV.QDILRGKR.ACVAVVNGTCISLRDYRM.....ELL....P......YSQFLK......NEE.........MEGM.....IKEQ.....VLDSLIVRELLYQKALEMGFVASDEEVIDTIKSDPTFQE.G.GVFSASKYREVLERNNLEPAQYEEYLKKMLSIQKLV
B4U8V8_HYDS0/1-151             MFEFIRK..H..K....E..TFAILSGIVTAAFFLWNFAAGNI.TSLFHSSE.NCIAKANGDCISIADFRR.....VAM....G...........T......NQQ.........MTPI.....LKQE.....ILNSLIDDDLLYEQAKKEGFLVSDKEVADIISQDPSFQV.D.GKFNFDRYKAVLAEAGYTPETYESYIKKQLTIQKYT
#=GC seq_cons                  MhchIR+..p..s....c..hhtslhsllshhFhLh..uhtuh.pp.h.upp.ssVApVsGpsIphp-ap+.....chc....h......hpp.hp......sp..........tpch.....lppt.....lLcshIs+cLLhppAp+hsltVoDppVsctIpp.PtFQ..s.GhFstphYpphLtpsshostpaEp.l+cplhlp+ht
//