Summary: Mitochondrial ribosomal protein S25
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Mitochondrial ribosomal protein S25 Provide feedback
This is the family of fungal 37S mitochondrial ribosomal S25 proteins.
Nishiyama T, Yamamoto H, Uchiumi T, Nakashima N;, Nucleic Acids Res. 2007;35:1514-1521.: Eukaryotic ribosomal protein RPS25 interacts with the conserved loop region in a dicistroviral intergenic internal ribosome entry site. PUBMED:17287295 EPMC:17287295
Saveanu C, Fromont-Racine M, Harington A, Ricard F, Namane A, Jacquier A; , J Biol Chem 2001;276:15861-15867.: Identification of 12 new yeast mitochondrial ribosomal proteins including 6 that have no prokaryotic homologues. PUBMED:11278769 EPMC:11278769
Internal database links
|Similarity to PfamA using HHSearch:||MRP-S23|
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR016939
This entry represents a family of fungal 37S mitochondrial ribosomal S25 proteins which are a component of the mitochondrial small ribosomal subunit [PUBMED:11278769].
The mapping between Pfam and Gene Ontology is provided by InterPro. If you use this data please cite InterPro.
|Cellular component||mitochondrial small ribosomal subunit (GO:0005763)|
|Molecular function||structural constituent of ribosome (GO:0003735)|
- the number of sequences which exhibit this architecture
a textual description of the architecture, e.g. Gla, EGF x 2, Trypsin.
This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
- the UniProt description of the protein sequence
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This clan contains families related to the thioredoxin family. Thioredoxins are small enzymes that are involved in redox reactions via the reversible oxidation of an active centre disulfide bond. The thioredoxin fold consists of a 3 layer alpha/beta/alpha sandwich and a central beta sheet.
The clan contains the following 45 members:2Fe-2S_thioredx AhpC-TSA AhpC-TSA_2 ArsC ArsD Calsequestrin DIM1 DSBA DUF1525 DUF1687 DUF2703 DUF4174 DUF836 DUF899 DUF953 ERp29_N Glutaredoxin GSHPx GST_N GST_N_2 GST_N_3 HyaE KaiB MRP-S23 MRP-S25 OST3_OST6 Phosducin Redoxin SCO1-SenC SelP_N SH3BGR T4_deiodinase Thioredox_DsbH Thioredoxin Thioredoxin_2 Thioredoxin_3 Thioredoxin_4 Thioredoxin_5 Thioredoxin_6 Thioredoxin_7 Thioredoxin_8 Thioredoxin_9 Tom37 TraF YtfJ_HI0045
We make a range of alignments for each Pfam-A family:
- the curated alignment from which the HMM for the family is built
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- Representative Proteomes (RPs) at 15%, 35%, 55% and 75% co-membership thresholds
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Curation and family details
|Seed source:||PfamB-B_2836 (release 25.0)|
|Number in seed:||31|
|Number in full:||140|
|Average length of the domain:||205.30 aa|
|Average identity of full alignment:||38 %|
|Average coverage of the sequence by the domain:||81.68 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||1|
|Download:||download the raw HMM for this family|
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