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0  structures 154  species 0  interactions 6486  sequences 54  architectures

Family: Keratin_B2_2 (PF13885)

Summary: Keratin, high sulfur B2 protein

Pfam includes annotations and additional family information from a range of different sources. These sources can be accessed via the tabs below.

The Pfam group coordinates the annotation of Pfam families in Wikipedia, but we have not yet assigned a Wikipedia article to this family. If you think that a particular Wikipedia article provides good annotation, please let us know.

This tab holds the annotation information that is stored in the Pfam database. As we move to using Wikipedia as our main source of annotation, the contents of this tab will be gradually replaced by the Wikipedia tab.

Keratin, high sulfur B2 protein Provide feedback

No Pfam abstract.

Internal database links

This tab holds annotation information from the InterPro database.

InterPro entry IPR002494

Keratin-associated proteins (KAPs) are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments [ PUBMED:9524245 , PUBMED:2250030 ]. This entry also includes the high-sulfur and high-tyrosine keratins from sheep and goats.

In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins, which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins [ PUBMED:14962103 ]. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins.

Gene Ontology

The mapping between Pfam and Gene Ontology is provided by InterPro. If you use this data please cite InterPro.

Domain organisation

Below is a listing of the unique domain organisations or architectures in which this domain is found. More...

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Pfam Clan

This family is a member of clan Keratin_assoc (CL0520), which has the following description:

Families in this clan are cysteine-rich and are from proteins associated with Keratin.

The clan contains the following 3 members:

Keratin_B2 Keratin_B2_2 PMG

Alignments

We store a range of different sequence alignments for families. As well as the seed alignment from which the family is built, we provide the full alignment, generated by searching the sequence database (reference proteomes) using the family HMM. We also generate alignments using four representative proteomes (RP) sets and the UniProtKB sequence database. More...

View options

We make a range of alignments for each Pfam-A family. You can see a description of each above. You can view these alignments in various ways but please note that some types of alignment are never generated while others may not be available for all families, most commonly because the alignments are too large to handle.

  Seed
(56)
Full
(6486)
Representative proteomes UniProt
(10174)
RP15
(674)
RP35
(1016)
RP55
(4593)
RP75
(7491)
Jalview View  View  View  View  View  View  View 
HTML View             
PP/heatmap 1            

1Cannot generate PP/Heatmap alignments for seeds; no PP data available

Key: ✓ available, x not generated, not available.

Format an alignment

  Seed
(56)
Full
(6486)
Representative proteomes UniProt
(10174)
RP15
(674)
RP35
(1016)
RP55
(4593)
RP75
(7491)
Alignment:
Format:
Order:
Sequence:
Gaps:
Download/view:

Download options

We make all of our alignments available in Stockholm format. You can download them here as raw, plain text files or as gzip-compressed files.

  Seed
(56)
Full
(6486)
Representative proteomes UniProt
(10174)
RP15
(674)
RP35
(1016)
RP55
(4593)
RP75
(7491)
Raw Stockholm Download   Download   Download   Download   Download   Download   Download  
Gzipped Download   Download   Download   Download   Download   Download   Download  

You can also download a FASTA format file containing the full-length sequences for all sequences in the full alignment.

HMM logo

HMM logos is one way of visualising profile HMMs. Logos provide a quick overview of the properties of an HMM in a graphical form. You can see a more detailed description of HMM logos and find out how you can interpret them here. More...

Trees

This page displays the phylogenetic tree for this family's seed alignment. We use FastTree to calculate neighbour join trees with a local bootstrap based on 100 resamples (shown next to the tree nodes). FastTree calculates approximately-maximum-likelihood phylogenetic trees from our seed alignment.

Note: You can also download the data file for the tree.

Curation and family details

This section shows the detailed information about the Pfam family. You can see the definitions of many of the terms in this section in the glossary and a fuller explanation of the scoring system that we use in the scores section of the help pages.

Curation View help on the curation process

Seed source: Jackhmmer:Q6L8G4
Previous IDs: none
Type: Family
Sequence Ontology: SO:0100021
Author: Coggill P
Number in seed: 56
Number in full: 6486
Average length of the domain: 47.00 aa
Average identity of full alignment: 38 %
Average coverage of the sequence by the domain: 73.29 %

HMM information View help on HMM parameters

HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 23.0 10.0
Trusted cut-off 23.0 10.0
Noise cut-off 22.9 9.9
Model length: 45
Family (HMM) version: 8
Download: download the raw HMM for this family

Species distribution

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Viroids Viroids Unclassified sequence Unclassified sequence

Selections

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AlphaFold Structure Predictions

The list of proteins below match this family and have AlphaFold predicted structures. Click on the protein accession to view the predicted structure.

Protein Predicted structure External Information
A0A0A0MQA4 View 3D Structure Click here
A0A0A0MQA4 View 3D Structure Click here
A0A0G2JLE6 View 3D Structure Click here
A0A0G2JLE6 View 3D Structure Click here
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A0A0G2JT38 View 3D Structure Click here
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A0A0G2K2X1 View 3D Structure Click here
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A0A0G2KA19 View 3D Structure Click here
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A0A0G2KA19 View 3D Structure Click here
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A0A0G2KA89 View 3D Structure Click here
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A0A1B0GR10 View 3D Structure Click here
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A0A1W2P709 View 3D Structure Click here
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A0A1W2P728 View 3D Structure Click here
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A0A1W2P739 View 3D Structure Click here
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A0A1W2P7W0 View 3D Structure Click here
A0A1W2P7W0 View 3D Structure Click here
A0A1W2P7W0 View 3D Structure Click here
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trRosetta Structure

The structural model below was generated by the Baker group with the trRosetta software using the Pfam UniProt multiple sequence alignment.

The InterPro website shows the contact map for the Pfam SEED alignment. Hovering or clicking on a contact position will highlight its connection to other residues in the alignment, as well as on the 3D structure.

Improved protein structure prediction using predicted inter-residue orientations. Jianyi Yang, Ivan Anishchenko, Hahnbeom Park, Zhenling Peng, Sergey Ovchinnikov, David Baker Proceedings of the National Academy of Sciences Jan 2020, 117 (3) 1496-1503; DOI: 10.1073/pnas.1914677117;