Summary: Stage VI sporulation protein F
Stage VI sporulation protein F Provide feedback
The sporulation-specific SpoVIF (YjcC) protein of Bacillus subtilis is essential for the development of heat-resistant spores. Its expression is governed by SigK [1,2].
Kuwana R, Yamamura S, Ikejiri H, Kobayashi K, Ogasawara N, Asai K, Sadaie Y, Takamatsu H, Watabe K;, Microbiology. 2003;149:3011-3021.: Bacillus subtilis spoVIF (yjcC) gene, involved in coat assembly and spore resistance. PUBMED:14523132 EPMC:14523132
Kuwana R, Ikejiri H, Yamamura S, Takamatsu H, Watabe K;, Microbiology. 2004;150:163-170.: Functional relationship between SpoVIF and GerE in gene regulation during sporulation of Bacillus subtilis. PUBMED:14702409 EPMC:14702409
Internal database links
- the number of sequences which exhibit this architecture
a textual description of the architecture, e.g. Gla, EGF x 2, Trypsin.
This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
- the UniProt description of the protein sequence
- the number of residues in the sequence
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We make a range of alignments for each Pfam-A family:
- the curated alignment from which the HMM for the family is built
- the alignment generated by searching the sequence database using the HMM
- Representative Proteomes (RPs) at 15%, 35%, 55% and 75% co-membership thresholds
- alignment generated by searching the UniProtKB sequence database using the family HMM
- alignment generated by searching the NCBI sequence database using the family HMM
- alignment generated by searching the metagenomics sequence database using the family HMM
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Curation and family details
|Author:||Bateman A, Coggill P|
|Number in seed:||50|
|Number in full:||276|
|Average length of the domain:||72.90 aa|
|Average identity of full alignment:||33 %|
|Average coverage of the sequence by the domain:||84.48 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||5|
|Download:||download the raw HMM for this family|
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