Summary: CppA C-terminal
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CppA C-terminal Provide feedback
This is the C-terminal domain of the CppA protein found in species of Streptococcus. CppA is a putative C3-glycoprotein degrading proteinase, involved in pathogenicity [1,2]. It is often found associated with PF14506.
Eng C, Thibessard A, Danielsen M, Rasmussen TB, Mari JF, Leblond P;, Arch Microbiol. 2011;193:287-297.: In silico prediction of horizontal gene transfer in Streptococcus thermophilus. PUBMED:21234750 EPMC:21234750
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1Cannot generate PP/Heatmap alignments for seeds; no PP data available
Key: available, not generated, — not available.
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Curation and family details
This family is new in this Pfam release.
|Number in seed:||13|
|Number in full:||384|
|Average length of the domain:||99.50 aa|
|Average identity of full alignment:||49 %|
|Average coverage of the sequence by the domain:||40.97 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||1|
|Download:||download the raw HMM for this family|
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For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the CppA_C domain has been found. There are 4 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.
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