# STOCKHOLM 1.0 #=GF ID SUKH_5 #=GF AC PF14567.7 #=GF DE SMI1-KNR4 cell-wall #=GF AU Coggill P;0000-0001-5731-1588 #=GF SE Pfam-B_7167 (release 26.0) #=GF GA 27.00 27.00; #=GF TC 27.00 27.00; #=GF NC 26.90 26.90; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF DR SO; 0000417; polypeptide_domain; #=GF CC Members of this family are related to the SMI1/KNR4-like or SUKH #=GF CC superfamily of proteins. #=GF SQ 29 #=GS C7N7K9_SLAHD/5-132 AC C7N7K9.1 #=GS R5TPA4_9FIRM/24-155 AC R5TPA4.1 #=GS G8M281_CLOCD/7-139 AC G8M281.1 #=GS YOBK_BACSU/6-138 AC O34596.1 #=GS YOBK_BACSU/6-138 DR PDB; 2PRV A; 6-138; #=GS YOBK_BACSU/6-138 DR PDB; 2PRV B; 6-138; #=GS U5MVI7_CLOSA/6-138 AC U5MVI7.1 #=GS D3FRA5_BACPE/5-133 AC D3FRA5.1 #=GS Q81Q97_BACAN/1-122 AC Q81Q97.1 #=GS D5SSH7_PLAL2/5-147 AC D5SSH7.1 #=GS Q5WIS2_BACSK/1-155 AC Q5WIS2.1 #=GS N0B2R8_9BACI/1-137 AC N0B2R8.1 #=GS Q81B94_BACCR/6-143 AC Q81B94.1 #=GS D3FZM0_BACPE/6-143 AC D3FZM0.1 #=GS Q880E4_PSESM/5-136 AC Q880E4.1 #=GS A6X428_OCHA4/5-137 AC A6X428.1 #=GS Q7M7B0_PHOLL/5-136 AC Q7M7B0.1 #=GS A1S8W2_SHEAM/1-131 AC A1S8W2.1 #=GS Q086X2_SHEFN/1-131 AC Q086X2.1 #=GS Q12R95_SHEDO/1-131 AC Q12R95.1 #=GS Q8EAQ0_SHEON/1-131 AC Q8EAQ0.1 #=GS D4ZBL0_SHEVD/1-131 AC D4ZBL0.1 #=GS A3QH89_SHELP/1-131 AC A3QH89.1 #=GS Q21KG4_SACD2/2-132 AC Q21KG4.1 #=GS S6B2A8_PSERE/1-133 AC S6B2A8.1 #=GS M4X311_9PSED/1-131 AC M4X311.1 #=GS K4KKC1_SIMAS/1-134 AC K4KKC1.1 #=GS Q0VNR5_ALCBS/1-133 AC Q0VNR5.1 #=GS B3PC71_CELJU/34-164 AC B3PC71.1 #=GS C1D4A4_DEIDV/3-141 AC C1D4A4.1 #=GS G2Z5P5_FLABF/2-145 AC G2Z5P5.1 C7N7K9_SLAHD/5-132 IKELISKYEDE...GFFTRV.........PPTPEMVKEAQEKLGVEIPEQFLEYLNIYSYGGINGTEILGIGM......TGKIMFLEETLEYRR.YGLPNN...LIVVENCDEW...VYCLDAETGK.......VVSWS...QLD..GLKDEYPSFDDFLLD..ELN R5TPA4_9FIRM/24-155 ELKFIIQQNQAIFGNAFLGK.........RATDAEIAQAEQKLALKIPDPFIWFLKEYGCGGY.WFDIMGYFK......NGKPKFVEITLEQRK.NGLPKK...YIIIEDCDEF...YYCIDSVSGK.......ISSWS...QYDKDGIRERFDNFYEFFKD..NLQ G8M281_CLOCD/7-139 ILRLIQDYGEE...DDFTG..........GSNSADILKVEEMLGLKLPKSYKWFIENYGHGGINGVEVYGISK......ADIPSCVRHTNNYRQ.YGLPVD...LVVIENCDEW...LYCID..TGKMVDDECPIVRWD...KNSK.STFLSFNNFYEYLYN..RFN YOBK_BACSU/6-138 VENFINENKQN...AIFTE..........GASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLFGVLVLGY.N......FDHASVVNRTNEYKEHYGLTDG...LVVIEDVDYF...AYCLDTNKMK..DGECPVVEWD...RVIG.YQDTVADSFIEFFYN..KIQ #=GR YOBK_BACSU/6-138 SS HHHHHHHCGGG...EEE--..........---HHHHHHHHHHHTS---HHHHHHHHHC-SEEETTEEE-S-.-......SSS-HHHHHHHHHHHHS---TT...EEEEEE-SSE...EEEEECCC-B..TTB--EEEEE...TTTE.EEEEEESSHHHHHHH..HHH U5MVI7_CLOSA/6-138 IEKFINENEED...AFFTG..........GIDYIKINDIEKQLCINFPESYKWFLGKYGFGGIFGVEILGCGK......GGVPSVIRETERYRK.LGLPLD...YVVISSSDEW...VYCLDLKNGD..KHDCKIISWD...RNIG.FRKIEAESFFQFILE..EFK D3FRA5_BACPE/5-133 IEEMINEYIED...GDFIG..........KVSDEAIEKAEEVLKVKFPRDYRKFVKHYGSGGICGVDILGIKG......VDYASVVEKTQQYRE.LGLPKK...YIVIENVGEF...VYCLDTLENF......NVVRWD...DISK.RELFRYTTFDEYLTD..SFQ Q81Q97_BACAN/1-122 MNNAVDQANKG...........................IQQMLNIKFPNSYHWFLKQYGSGGLDGMDIHGCET.....TAADSSVVYHTKSYRETYNLPEQ...YIVLNDIDGT...MTCLDTNQMKDG..ECPVVFWS...RFSKELYAITYENFGDYLLD..CLQ D5SSH7_PLAL2/5-147 IKLLIEKLKDA......GSD.IYWLG...NASRGSIERLQELLHTRLPLSLQKFLEEYGGGGIVGEEISGIED.DNPSLDYRGTIYGDTMLSRTDYGLPLN...LIVVY.LGSD.DVVLCIDTNLFT..GDECPVVSFD...VF.KKTTKHLANTFDEFLMD..YLE Q5WIS2_BACSK/1-155 MEMSVETYQKA...KEIILDEEEIADFVGGRTEELINLAEEKLGLKFTGLYLDYLKTFGAGNFGAQEIYGIID.ADFENSSVPDAIWYTLTERKEIRLPDN...LLVIYDTGSD.E.LFCLDFNQRADNG.EPKVVSLVPGVDLESQTYEIIANDFGDFLLD..LVK N0B2R8_9BACI/1-137 MNDVINLIETS...KP.............RVTDINIKSAEEQLGVAFPNQYKDLFKLTNNAQIGEWTLFPIKDPKNLKR.TWDDIVRQNQEVRDE.GMAVN...LISIGEDGTG.D.KLCFRIVDTV...MLNKVYIWY...HETEEVEE.IASNLKEFIVSNSEFE Q81B94_BACCR/6-143 IANLLDSMLDK............ELEDLDSPSDNDWRELEKKFGCQFPKEFKCFIELMSEYVF.PGDILNVSSGKTNGN....DTIEFIYDYEMKEGFWKK..ELIPFYSIGNG.D.YFCLHSKEGQ....RTGVYFYF...HEEHGVTK.EADNFEEWLNQLPTYL D3FZM0_BACPE/6-143 IANLLDGILDK............ELGNLDTPLASDWEYIEKKFGCQFPSEFKFFIELMSKYSF.PGDILNVSNGNTNGN....DTIEFTYDYEMKQGGWKE..ELIPFYSIGNG.D.YFCLLSNECP....NTGVYYYS...HEETNIDK.EANNFEEWLKQLPIFL Q880E4_PSESM/5-136 IRDVVAELKSV.........RMSLPNAQRLPDDALIIAYERELGISFLDEYKFFAKEASDSIFNGKDALRLTVDRNSPR.ELLNVVAEAREQ....GVPKS...WLPICEDNGN...YYCLLE........DGSVIYWV.....HDGRSNETWPSLASWIKH..AWI A6X428_OCHA4/5-137 IASIIEEINRI.........DDPTGRKLTLPDDALIHKYESATGFQFSEDYKEFLKNVSNAFVGYLSPLILNEEMGGVYGELLTTIQQARSV....GLPDN...WLPICEDNGD...YYCIAP........DGLIRFWS.....HDGPSDESWPNLATWADE..VWI Q7M7B0_PHOLL/5-136 LNDVIEEIERL.........SDGQRNDVDLPDDELISQYEKEIGFEFSNDYKEVLKKISNIFYGTIDLLSVTRDKKY.YGELSQALSDAREQ....GLPEN...LLPICEDNGS...YYCIDY........DGKIKYWT.....LDGYNEESWPDLASWIKQ..VWI A1S8W2_SHEAM/1-131 MHELIEQLQEM.........SEQVPVPLELPSFDQLLDVEEAILIPLPADLKEYLLNASDVIVGSLEPVTVADPHSHTY..LSEVAAYAWSI....GLPRE...MIPICQNGDN...FYCIDQ........EGQVHYWA.....FGDFTEDQWDSFWEWAED..VWI Q086X2_SHEFN/1-131 MNDIIEQLQEL.........SETVPVPLELPTFEQLVEVEEQILIGLPNDLKEFLLYGSDVIYGTLEPVTAADPSSHTY..LPEVACYAWSI....GLPRE...QIAICQIGDS...FYCIDE........ESQVLFWK.....KGRFSDKVWESFWHWAED..VWL Q12R95_SHEDO/1-131 MHELIEQLQAL.........NEPVPVPLELASFEQLVEVEEQILISLPRELKVYLMEASDVVYGHIEPVTASDPQSHTY..LPEVTCYAWSI....GLPRE...LIAICQQGDN...FYCIDQ........DGQVHFWK.....NGRFVGEVFESFWHWVDR..VWL Q8EAQ0_SHEON/1-131 MHDIIEQLQER.........SETVPVPLELPTFEQLVEVEEQILIPLPRELKEYLLHASDVIYGVIEPVTAADPYSHTY..LPEVTCYAWSI....GLPRD...LIAICQLGDD...FYCIDQ........DGQVHFWQ.....NGDFTDTYWESFWEWVED..IWL D4ZBL0_SHEVD/1-131 MHEIIEQLQEL.........SETVPIPLELPTFEQIVVVEEEILMPLPPELKEYLLYASDVIYGSLEPVTASDPYSHTY..LAEVTAYAWSI....GMSRE...YVAICQQGNS...FYCIDQ........EGQVMLWS.....EDELESETWESFWQWAEH..VWL A3QH89_SHELP/1-131 MHDLIEQLREL.........SETVPVPLELPSFDQLVEVEEQILIPLPAELKEYLLYASDVIHGTLEPVTAADPYAHTY..LPEVTSYAWSI....GMPRE...YIAICQQGDD...FYCIDQ........EGQVMLWQ.....DGELAEESWESFWQWVEE..VWI Q21KG4_SACD2/2-132 INEIAEMLAAR.........SLKTAYPLELPTMDDIVEAHEAMLISVPADFRDYLLHSSNCIYGRLEPVTVADRNSHTY..LPEVAAEAWSR....GMPRE...MIPLCVDGDN...VYCVAE........DGEVFLWE.....GDDDMESVAEDVWQWVRD..VWL S6B2A8_PSERE/1-133 MEEVIEQLREL.........NEPVPVPLELPDEELLVEIEEQMLINLPFELREFLLKVSDVVYGRLEPVTATDPQSHTY..LPEVAAVAWDL....GVPRD...LVPLCQDGRN...YYLVDG........EGEVLLWD...GDEGELTDESWDTVWHWARD..VWL M4X311_9PSED/1-131 MEDVIELLREA.........NEPVPVPLELPDEELLVEIEEALLIGIPSEFREFLLKVSDVIYGRLEPVTVTDPHSHTY..LPEVAAVAWSM....GLPRE...LVPLCADGDD...YYAVGE........DGEVVLWA.....DGELTEETWDSVWTWARD..VWL K4KKC1_SIMAS/1-134 MEEILEQLQAA.........AQSSAWGLEKPEHEHTVDAEEQMLLPFPRDFREFLLETGDLLVGSLEPAVVADPSAHNY..LPEMAANAWDL....GVPRH...LIPFCANPDSPKAFYCVDP........DGEIQLWW.....GSRQDSESWETIWYWARD..VWL Q0VNR5_ALCBS/1-133 MDDIVDMLRER.........HDGGLIALELPDEDRLVEIEEQLLISLPADYKAFLLSASDIVCGSLEPATVMDDYAHNF..LPEMAANSWNQ....GLPRY...LIPVCETPNG...IYAMSQ........EGEVVLWQ...PEQGINEDEVWGSIWQWARE..VWL B3PC71_CELJU/34-164 MEDVIELLREY.........NEPVPVPLDLPDEDQLVEIEEEILLPIPRDMRRFLLEVSDVVYGSIEPVTAADPHSHTY..LPEVTATAWSL....GVPRY...LMPLCEVNGN...YYCVEP........EGEVVFWR.....DGDLTDETWPSVWHWARD..VWL C1D4A4_DEIDV/3-141 QEELFKRLRAG.........GVPAPLIPKLPDDREIDALEVLLETRLPPSYRAYLLTLSDVLAGAYWPLVIHHELTGGR.....LLDQTRDLRAI.GLPQF...LVPFETSQDG.D.AFCFDTRSAGP...EYAVVRWV...HDDGSFDTYRWPSFIAWVQD..EWL G2Z5P5_FLABF/2-145 TEELLKKLSNY...IIPNESINLAGM...PANDDEIKDAEKQLNIKFHDDYISFIKKFGGAYA.GIPIYAFTNNEMLSTDSIVDLTNSFREDYADDYRSKIIKESYVISFDGSG.N.PILINK........KGEVIIFY...HDNNEYK.ILSGSLSKLLED..ILD #=GC SS_cons HHHHHHHCGGG...EEE--..........---HHHHHHHHHHHTS---HHHHHHHHHC-SEEETTEEE-S-.-......SSS-HHHHHHHHHHHHS---TT...EEEEEE-SSE...EEEEECCC-B..TTB--EEEEE...TTTE.EEEEEESSHHHHHHH..HHH #=GC seq_cons hc-lI-plpct.................phPsp-plhclEEplhlphPp-a+pFLhphSsshhssl-.lshsc..shsh..lsclss.shsh....GLP+p...hlslspssss...hYClDp........-spVhhWs.....psphpcppasoFhcWlc-..sal //