Summary: Soluble lytic murein transglycosylase L domain
Soluble lytic murein transglycosylase L domain Provide feedback
Soluble lytic murein transglycosylase (SLT) consists of three domains, an N-terminal U domain, an L domain (linker domain) and a C-terminal domain (C). The L domain may be involved in the interaction of the enzyme with peptidoglycan .
van Asselt EJ, Thunnissen AM, Dijkstra BW;, J Mol Biol. 1999;291:877-898.: High resolution crystal structures of the Escherichia coli lytic transglycosylase Slt70 and its complex with a peptidoglycan fragment. PUBMED:10452894 EPMC:10452894
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Curation and family details
This family is new in this Pfam release.
|Number in seed:||96|
|Number in full:||1072|
|Average length of the domain:||70.40 aa|
|Average identity of full alignment:||40 %|
|Average coverage of the sequence by the domain:||10.99 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||1|
|Download:||download the raw HMM for this family|
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For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the SLT_L domain has been found. There are 3 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.
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