# STOCKHOLM 1.0 #=GF ID HMG_box_5 #=GF AC PF14887.7 #=GF DE HMG (high mobility group) box 5 #=GF AU Eberhardt R;0000-0001-6152-1369 #=GF GA 25.0 25.0 #=GF NC 24.9 24.9 #=GF TC 25.0 25.0 #=GF SE CATH:1l8y_A_00 #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 12590579 #=GF RT Solution structure and DNA binding property of the fifth HMG box #=GF RT domain in comparison with the first HMG box domain in human #=GF RT upstream binding factor. #=GF RA Yang W, Xu Y, Wu J, Zeng W, Shi Y; #=GF RL Biochemistry. 2003;42:1930-1938. #=GF DR INTERPRO; IPR029215; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC Nucleolar transcription factor/upstream binding factor contains #=GF CC six HMG box domains. This is the fifth HMG box domain in these #=GF CC proteins. This domain has lost DNA-binding ability [1]. #=GF SQ 77 F6ZYJ1.1/232-316 AKLPETPKTAEEIWQQSVIGDYLARFKNDRAKALK.CMEATWLNMEKKEKIMWIKKAAEDQKRYE......RELSDMRSAPTPT.TAGKKVKF F7DIJ6.1/449-533 AKLPETPKTAEEIWQQSVIGDYLARFKNDRAKALK.CMEATWLNMEKKEKIMWIKKAAEDQKRYE......RELSDMRSAPTPT.TAGKKVKF A0A0Q3UU13.1/427-511 GKLPESPKTAEEIWQQSVIGDYLARFKNDRGKALK.AMEATWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPCST.NSAKKMKF P17480.1/479-563 GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALK.AMEMTWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPAAT.NSSKKMKF A0A1A6FZL0.1/479-563 GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALK.AMEMTWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPAAT.NSSKKMKF A0A4U5S6A7.1/501-585 GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALK.AMEMTWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPAAA.NSSKKMKF P25977.1/479-563 GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALK.AMEMTWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPAAT.NSSKKMKF L5KRT8.1/479-563 GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALK.AMEMTWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPAAA.NSSKKMKF A0A4U5S6G9.1/479-563 GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALK.AMEMTWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPAAA.NSSKKMKF P25976.1/479-563 GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALK.AMEMTWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPAAT.NSSKKMKF L8Y4N5.1/488-572 GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALK.AMEMTWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPAAT.NSSKKMKF F7DF94.1/479-563 GKLPESPKTAEEIWQQSVIGDYLARFKNDRVKALK.AMEVTWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPAAA.NSSKKMKF A0A226MAW1.1/375-459 GKLPESPKTAEEIWQQSVIGDYLARFKNDRGKALK.AMEATWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPCST.NSAKKMKF A0A3M0J1G0.1/479-563 GKLPESPKTAEEIWQQSVIGDYLARFKNDRSKALK.AMEATWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPCST.NSTKKMKF A0A3Q2U943.1/479-563 GKLPESPKTAEEIWQQSVIGDYLARFKNDRGKALK.AMEATWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPCST.NSAKKVKF A0A402FEF0.1/508-592 GKLPESPKTAEEIWQQSVIGDYLARFKNDRGKALK.AMETTWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPCST.NASKKMKF A0A1D5P0C5.2/465-549 GKLPESPKTAEEIWQQSVIGDYLARFKNDRGKALK.AMEATWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPCST.NSAKKVKF A0A1U7RH24.1/479-563 GKLPESPKTAEEIWQQSVIGDYLARFKNDRGKALK.AMEATWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPCTA.NSSKKVKF H3CF76.1/472-557 SRLPDPPKTAQEIWQQSVIGDYMARFKSDRSKAQK.AMEATWSNMEKKEKIMWIKKAAEDQKRYE......RELYEMRSPAAAAiASGKKMKF H3C500.1/472-557 SRLPDPPKTAQEIWQQSVIGDYMARFKSDRSKAQK.AMEATWSNMEKKEKIMWIKKAAEDQKRYE......RELYEMRSPAAAAiASGKKMKF A0A498LZ18.1/469-553 GKLPETPKTAQEIWQQSVIGDYLARFKNDRAKAQK.AMEATWNTMEKKEKIMWIKKAAEDQKRYE......RELSEMRSPAPVV.TPGKKMKF G3HLJ8.1/442-526 GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALK.AMEMTWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPAAT.NSSKKMKF M7C032.1/459-543 AKLPESPKTAEEIWQQSVIGDYLARFKNDRGKALK.AMEATWNNMEKKEKLMWIKKAAEDQKRFE......RELSEMRAPPCSA.NSSKKMKF A0A1S3S2S9.1/298-382 SRLPDTPKTAQDIWQQSVIGDYLARFKNDRPKAQK.AMEATWNTMEKKEKIMWIKKAAEDQKRYE......RELSEMRSPATII.ASGKKMKF H2LBG0.2/467-552 SRLPDPPKTAQDIWQQSVIGDYLARFKNDRPKAQK.AMEVAWSTMEKKEKIMWIKKAAEDQKRYE......RDLCEMRSPAAAAiASGKKMKF A0A3Q0G3L6.1/442-526 GKLPESPKTAEEIWQQSVIGDYLARFKNDRGKALK.AMEATWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPCTA.NSSKKVKF A0A3Q2UAH3.1/442-526 GKLPESPKTAEEIWQQSVIGDYLARFKNDRGKALK.AMEATWNNMEKKEKLMWIKKAAEDQKRYE......RELSEMRAPPCST.NSAKKVKF G1KTM9.1/479-563 GKLPETPKTAEEIWQQSIIGDYLARFKNDRGKALK.AMEATWNNMEKKEKLMWIKKAAEDQKRYD......RELIEMRAPPPST.NASRKMKF A0A1S3S301.1/480-564 SRLPDTPKTAQDIWQQSVIGDYLARFKNDRPKAQK.AMEATWNTMEKKEKIMWIKKAAEDQKRYE......RELSEMRSPATII.ASGKKMKF A0A1S3S3G7.1/465-549 SRLPDTPKTAQDIWQQSVIGDYLARFKNDRPKAQK.AMEATWNTMEKKEKIMWIKKAAEDQKRYE......RELSEMRSPATII.ASGKKMKF H2LBF9.2/469-554 SRLPDPPKTAQDIWQQSVIGDYLARFKNDRPKAQK.AMEVAWSTMEKKEKIMWIKKAAEDQKRYE......RDLCEMRSPAAAAiASGKKMKF W5N2H8.1/466-550 ARLPESPKTAQEIWQQSVIGDYMARYRNDRTKALK.AMEATWNTMEKKEKIMWIKKAAEDQKRYE......RELSEMRAPPAVV.NPVKKMKF F1QZ83.1/469-553 GKLPETPKTAQEIWQQSVIGDYLARFKNDRAKAQK.TMEATWNTMEKKEKIVWIKKAAEDQKRYE......RELSEMRSPAPVI.TPGKKMKF A0A3B4ALD8.1/414-499 SRLPDPPKTAQDIWQQSVIGDYLARFKNDRPKAQK.AMEATWSTMEKKEKIMWIKKAAEDQKRYE......RDLCEMRSPTAAAiASGKKMKF H3BB71.1/480-562 -KLPESPKNAEEIWQQSVIGDYLARFKNDRTKALK.TMEATWNTMEKKEKLMWIKKAAEDQKRYE......RELSEMRSSTSSV.-NPKKVKF M3XJX1.1/212-294 -KLPESPKNAEEIWQQSVIGDYLARFKNDRTKALK.TMEATWNTMEKKEKLMWIKKAAEDQKRYE......RELSEMRSSTSSV.-NPKKVKF A0A4W3HSB3.1/440-523 GKLPEPPKTAEEIWQQNVIGDYLAKFRNDRSKAIK.AMESTWSAMEKKEKIVWIKKAAEDQKRYE......RELSELRSP-APT.PMPKKMKF A0A4W3HZ34.1/428-511 GKLPEPPKTAEEIWQQNVIGDYLAKFRNDRSKAIK.AMESTWSAMEKKEKIVWIKKAAEDQKRYE......RELSELRSP-APT.PMPKKMKF A0A4W3IH28.1/471-554 GKLPEPPKTAEEIWQQNVIGDYLAKFRNDRSKAIK.AMESTWSAMEKKEKIVWIKKAAEDQKRYE......RELSELRSP-APT.PMPKKMKF A0A4W3HV74.1/471-554 GKLPEPPKTAEEIWQQNVIGDYLAKFRNDRSKAIK.AMESTWSAMEKKEKIVWIKKAAEDQKRYE......RELSELRSP-APT.PMPKKMKF A0A4W3HS51.1/459-542 GKLPEPPKTAEEIWQQNVIGDYLAKFRNDRSKAIK.AMESTWSAMEKKEKIVWIKKAAEDQKRYE......RELSELRSP-APT.PMPKKMKF A0A4W3HZ61.1/380-463 GKLPEPPKTAEEIWQQNVIGDYLAKFRNDRSKAIK.AMESTWSAMEKKEKIVWIKKAAEDQKRYE......RELSELRSP-APT.PMPKKMKF A0A4W3HZ55.1/390-473 GKLPEPPKTAEEIWQQNVIGDYLAKFRNDRSKAIK.AMESTWSAMEKKEKIVWIKKAAEDQKRYE......RELSELRSP-APT.PMPKKMKF A0A4W3HV07.1/485-568 GKLPEPPKTAEEIWQQNVIGDYLAKFRNDRSKAIK.AMESTWSAMEKKEKIVWIKKAAEDQKRYE......RELSELRSP-APT.PMPKKMKF A0A4W3HZ86.1/427-510 GKLPEPPKTAEEIWQQNVIGDYLAKFRNDRSKAIK.AMESTWSAMEKKEKIVWIKKAAEDQKRYE......RELSELRSP-APT.PMPKKMKF H3CBL6.1/192-263 SELPEKPKTPQQLWYNHEKKAYMKLHPEVSQKELKeVLRRQWSQLSDKRRLKWISKALELQKDYE......GSMRAYH------.-------- H3CBL6.1/448-531 AKLPETPKTAEEMWQHSVIGDYLAKYRSDRRKAQV.GMEAAWKSMEKKEKIPWIKKAAEDQKRYE......RELLEMRTLPAAP.-SQRKHKF A0A1S3QVJ3.1/437-515 -KLPETPKTAEEMWQQGVVGDYLAKYRSDRKKTQS.AMESAWKAMEKKEKIPWIKKAAEDQKRYE......RELLEMRTAQAGA.GQ-R---- A0A401SFB9.1/489-571 GKLPEPPKTAEEIWQQNVIGDYLAKYRNDRTKAVR.TMEATWSAMEKKEKLMWIKKAAEDQKRYE......KELSEIRTPAANT.--NKKMKF A0A401NVS9.1/488-568 GKLPEPPKTAEEIWQQNVIGDYLAKYRNDRSKAFR.AMEATWSAMEKKEKLMWIKKAAEDQKRYE......KELSEIRTPAT--.--NKKMKF A0A3B3ZE82.1/417-494 -KLPETPKTAEDMWQSSVSADYLAKYRGDRRKAQV.AMEASWKSMEKKEKIPWIKKAAEDQKRYE......RELLEMRGPAVAV.AA------ B0S7C2.1/196-278 -DLPEKPKTPQQLWYNHEKKTYMKIHPEVSQKELKeALRRQWSQLSDKKRLKWISKALELQKHYE......DTMRAYIEAHPDA.NSDEHV-- B0S7C2.1/433-505 -RLPETPKTPEEMWQQSVIGDYLAKYRSDRKKAQN.AMDAAWKAMEKKEKIPWIKKAAEDQKRYE......RELLEMRTVL---.-------- A0A1S3LUZ2.1/437-513 -KIPETPKTAEEMWQQSIIGDYLAKYRSDRKKAQS.AMESAWKAMEKKEKIPWIKKAADDQKRYE......RELLESRTPQSGA.G------- A0A0P7VLZ5.1/443-523 -RLPETPKTAEEMWQQSVIGDYLAKYRSDRKKAQS.AMESTWKAMEKKEKIPWIKKAAEDQKRYEvqyrpvRELLEMRTPVSG-.-------- A0A3B3I9F1.1/425-506 -KLPETPKTAEEMWQHSVIGDYLAKYRSDRRKAQV.AMEAAWKSMEKKEKIPWIKKAAEDQKRYEvqyrpvRELLEMRSPAAGQ.-------- A0A3B3I6W5.1/425-506 -KLPETPKTAEEMWQHSVIGDYLAKYRSDRRKAQV.AMEAAWKSMEKKEKIPWIKKAAEDQKRYEvqyrpvRELLEMRSPAAGQ.-------- A0A1S3QUX1.1/437-520 -KLPETPKTAEEMWQQGVVGDYLAKYRSDRKKTQS.AMESAWKAMEKKEKIPWIKKAAEDQKRYEvqyrpvRELLEMRTAQAGA.GQ------ C0H9W0.1/437-520 -KLPETPKTAEEMWQQGVVGDYLAKYRSDRKKTQS.AMESAWKAMEKKEKIPWIKKAAEDQKRYEvqyrpvRELLEMRTAQAGA.GQ------ A0A1S3QVJ8.1/429-512 -KLPETPKTAEEMWQQGVVGDYLAKYRSDRKKTQS.AMESAWKAMEKKEKIPWIKKAAEDQKRYEvqyrpvRELLEMRTAQAGA.GQ------ A0A1S3QW59.1/437-520 -KLPETPKTAEEMWQQGVVGDYLAKYRSDRKKTQS.AMESAWKAMEKKEKIPWIKKAAEDQKRYEvqyrpvRELLEMRTAQAGA.GQ------ W5MVX2.1/431-494 -RLPETPKTAEEMWQQSVIGDYLAKYRNDRKKAQN.AMESTWKAMEKKEKIPWIKKAAEDQKRYE......V------------.-------- A0A4W3HZ97.1/471-536 GKLPEPPKTAEEIWQQNVIGDYLAKFRNDRSKAIK.AMESTWSAMEKKEKIVWIKKAAEDQKRYE......VH-----------.-------- A0A4W3JWJ2.1/495-577 -RLPETPKTAEEMWQRSVVSEYLVRCKNDSRKAQA.AMEMAWSALDKKQKIPWIKKAANDQKRYE......RELTEIRSPVTA-.QSQKKMKF V9KEU9.1/495-577 -RLPETPKTAEEMWQRSVVSEYLVRCKNDSRKAQA.AMEMAWSALDKKQKIPWIKKAANDQKRYE......RELTEIRSPVTA-.QSQKKMKF B0S7C3.1/196-278 -DLPEKPKTPQQLWYNHEKKTYMKIHPEVSQKELKeALRRQWSQLSDKKRLKWISKALELQKHYE......DTMRAYIEAHPDA.NSDEHV-- B0S7C3.1/433-510 -RLPETPKTPEEMWQQSVIGDYLAKYRSDRKKAQN.AMDAAWKAMEKKEKIPWIKKAAEDQKRYEvqyrtvRELLEMRTV----.-------- A0A1S3LUY3.1/429-510 -KIPETPKTAEEMWQQSIIGDYLAKYRSDRKKAQS.AMESAWKAMEKKEKIPWIKKAADDQKRYEvqyrpvRELLESRTPQSGA.-------- A0A1S3LVQ2.1/437-518 -KIPETPKTAEEMWQQSIIGDYLAKYRSDRKKAQS.AMESAWKAMEKKEKIPWIKKAADDQKRYEvqyrpvRELLESRTPQSGA.-------- A0A1S3LUJ2.1/437-518 -KIPETPKTAEEMWQQSIIGDYLAKYRSDRKKAQS.AMESAWKAMEKKEKIPWIKKAADDQKRYEvqyrpvRELLESRTPQSGA.-------- A0A1S3LUN6.1/437-518 -KIPETPKTAEEMWQQSIIGDYLAKYRSDRKKAQS.AMESAWKAMEKKEKIPWIKKAADDQKRYEvqyrpvRELLESRTPQSGA.-------- H3AHS5.1/431-518 -KLPETPKTAEEMWQQSIIGDYLAKYRNDRKKAQV.AMEATWNAMEKKEKIPWIKKAAEDQKRYEvkertlRELAEIRSPMAPL.TQ-KKPK- A0A4W3KBR0.1/495-573 -RLPETPKTAEEMWQRSVVSEYL----NDSRKAQA.AMEMAWSALDKKQKIPWIKKAANDQKRYE......RELTEIRSPVTA-.QSQKKMKF A0A401T3V4.1/533-596 -KWPESPKTAEKIWEQTVINDYTAKHRNDRKKAQS.AMEAAWKAMEKKEKIPWIKKAADDQRRYE......E------------.-------- S4RXC0.1/476-558 -KTPETPKTAEEIFQQTKLVECLVKYKNDKKKALK.ALDAEWKGLDKKQKIFWIKAAAEDQKRYE......RELTTLRTTAAPP.-HNKKVKF F1R7C9.1/2-29 -----------------------------------.-----------KEKIPWIKKAAEDQKRYE......RELLEMRTVL---.-------- A0A087TKE7.1/292-339 -------------------------CQMDRREAME.KLRKMWSNLSDNKKVKWIRKAVQDEQRYG......MEVEKYRSE----.-------- //