# STOCKHOLM 1.0 #=GF ID zf-CCHC_6 #=GF AC PF15288.7 #=GF DE Zinc knuckle #=GF AU Coggill P;0000-0001-5731-1588 #=GF SE Jackhmmer:A6NNH2 #=GF GA 22.00 22.00; #=GF TC 22.00 22.00; #=GF NC 21.90 21.90; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF DR INTERPRO; IPR041670; #=GF DR SO; 0000417; polypeptide_domain; #=GF CC This Zinc knuckle is found in FAM90A mammalian proteins. #=GF SQ 20 #=GS G1LUL2_AILME/36-74 AC G1LUL2.1 #=GS G3UMF8_LOXAF/26-65 AC G3UMF8.1 #=GS G3SXL1_LOXAF/33-73 AC G3SXL1.1 #=GS G1SPG0_RABIT/38-77 AC G1SPG0.1 #=GS H2PRY5_PONAB/1284-1323 AC H2PRY5.1 #=GS B7QCS1_IXOSC/1223-1264 AC B7QCS1.1 #=GS Q9D4F3_MOUSE/33-72 AC Q9D4F3.1 #=GS G3HQ43_CRIGR/35-74 AC G3HQ43.1 #=GS H0XR54_OTOGA/41-80 AC H0XR54.1 #=GS G1T142_RABIT/40-77 AC G1T142.1 #=GS F6RXS9_CALJA/41-80 AC F6RXS9.2 #=GS F90AJ_HUMAN/41-80 AC P0C7V4.1 #=GS F7CN42_HORSE/40-79 AC F7CN42.2 #=GS G1M211_AILME/41-80 AC G1M211.1 #=GS G1Q423_MYOLU/43-84 AC G1Q423.1 #=GS G1P3A7_MYOLU/41-78 AC G1P3A7.1 #=GS F1MHF8_BOVIN/1-20 AC F1MHF8.3 #=GS A2A4E2_MOUSE/37-76 AC A2A4E2.1 #=GS G3HM26_CRIGR/14-53 AC G3HM26.1 #=GS G3HWM8_CRIGR/14-53 AC G3HWM8.1 G1LUL2_AILME/36-74 RVKCKNCGAFGHLASSRRCPMKC..WGRALAPQPLGSK...KNE G3UMF8_LOXAF/26-65 RRKCKNCGAFGHTARSKRCPIKC..WSRVVVPKALGSKK..MKE G3SXL1_LOXAF/33-73 RRKCKNCRVFGHTTRSKRCPIKC..WSGATVPQALGSEK.MKKE G1SPG0_RABIT/38-77 KVKCKNCGAFGHLAKSKRCPMKS..WGGAVPLLALGRNQ..EKE H2PRY5_PONAB/1284-1323 KLKCGACGAIGHMRTNKFCPLYY..QTNVPPSKPVAMTE..EQE B7QCS1_IXOSC/1223-1264 KLKCGACGAIGHMRTNKTCPQYQ..PMAPLPPVQVAMTEEQEEE Q9D4F3_MOUSE/33-72 RVKCRDCGAFGHTVRSRKCPIKC..WDGAKAPLPLGVKK..EKE G3HQ43_CRIGR/35-74 RMKCKNCGAFGHTMRSKKCPIKS..WDGAKVPLPLGIKK..EKE H0XR54_OTOGA/41-80 RIKCKECGAFGHRASSRRCPIRK..CPGALCPQPVFPNR..GKE G1T142_RABIT/40-77 RVKCKNCGAFGHMTHSRRCPIKC..SDGTLTLQPMGPN....KE F6RXS9_CALJA/41-80 RVKCKDCGAFGHTTRSTRCPMKC..WNGALVLQTSGKKE..GKE F90AJ_HUMAN/41-80 RLKCKNCGAFGHTARSTRCPMKC..WKAALVPATLGKKE..GKE F7CN42_HORSE/40-79 RVKCKDCGAFGHHARSLRCPMKR..WHGALAPQPLGSRK..LKE G1M211_AILME/41-80 RVKCRDCGAFGHKASSSRCPMKH..WGGALVPQAWGSRK..LKE G1Q423_MYOLU/43-84 RVRCWKCGAFGHKASSLTCPMKRNHWNRSPAPQAMGANK..TKE G1P3A7_MYOLU/41-78 RVRCWNCRAFGHKA..SRCPLKH..WNRSPVPQAMGSNM..MKE F1MHF8_BOVIN/1-20 ....................MKR..WQGALVPLPLGSRF..GKE A2A4E2_MOUSE/37-76 MVKCRNCGGFGHNVRSRMCPMKQ..GHVLLVSQPLGARK..EKE G3HM26_CRIGR/14-53 RVKCKDCGAFGHTLRSRRCPIKC..AYGFLVPQAQEGRK..EKE G3HWM8_CRIGR/14-53 RVKCKDCGAFGHTSKSSRCPNKG..AYGFLVPQPQVRRK..EKE #=GC seq_cons RVKCKsCGAFGHps+S+RCPhKp..WsGuLsPQslGs+c..tKE //