Summary: Exocyst complex component Sec5
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Exocyst complex component Sec5 Provide feedback
This Sec5 family of eukaryotic proteins conserved is not representing the Sec5-Ral binding site.
Sugihara K, Asano S, Tanaka K, Iwamatsu A, Okawa K, Ohta Y;, Nat Cell Biol. 2002;4:73-78.: The exocyst complex binds the small GTPase RalA to mediate filopodia formation. PUBMED:11744922 EPMC:11744922
Internal database links
|Similarity to PfamA using HHSearch:||Dor1|
External database links
This tab holds annotation information from the InterPro database.
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This example describes an architecture with one
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This clan includes an N-terminal domain from several vesicle transport proteins that are related to Vps51.
The clan contains the following 16 members:COG2 COG5 COG6 Dor1 DUF2450 Exo70 Sec15 Sec3_C Sec3_C_2 Sec5 Sec6 Sec8_exocyst Vps51 Vps52 Vps53_N Zw10
We make a range of alignments for each Pfam-A family:
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1Cannot generate PP/Heatmap alignments for seeds; no PP data available
Key: available, not generated, — not available.
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Curation and family details
This family is new in this Pfam release.
|Seed source:||Pfam-B_353125 (release 26.0)|
|Author:||Wood V, Coggill P|
|Number in seed:||80|
|Number in full:||361|
|Average length of the domain:||197.60 aa|
|Average identity of full alignment:||24 %|
|Average coverage of the sequence by the domain:||22.04 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||1|
|Download:||download the raw HMM for this family|
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