Summary: PELOTA RNA binding domain
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PELOTA RNA binding domain Provide feedback
This RNA binding Pelota domain  is at the C terminus of a PRTase family . These PRTase+Pelota genes are found in the biosynthetic operon associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response .
Müller FH, Bandeiras TM, Urich T, Teixeira M, Gomes CM, Kletzin A , Mol Microbiol 2004;0:0-0.: Coupling of the Pathway of Sulfur Oxidation to Dioxygen Reduction: Characterization of a Novel Membrane-Bound Thiosulfate:Quinone Oxidoreductase 2 PUBMED:0 EPMC:0
External database links
This tab holds annotation information from the InterPro database.
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- the number of sequences which exhibit this architecture
a textual description of the architecture, e.g. Gla, EGF x 2, Trypsin.
This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
- the UniProt description of the protein sequence
- the number of residues in the sequence
- the Pfam graphic itself.
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The members of this clan are all involved in binding to ribose sugar of RNA. Indeed, the key RNA binding residues are conserved across the different families . Members of this clan form mixed alpha-helical and beta-sheet structures .
The clan contains the following 5 members:eRF1_3 PELOTA_1 Ribosomal_L7Ae RNase_P_pop3 SpoU_sub_bind
We make a range of alignments for each Pfam-A family:
- the curated alignment from which the HMM for the family is built
- the alignment generated by searching the sequence database using the HMM
- Representative Proteomes (RPs) at 15%, 35%, 55% and 75% co-membership thresholds
- alignment generated by searching the NCBI sequence database using the family HMM
- alignment generated by searching the metagenomics sequence database using the family HMM
You can see the alignments as HTML or in three different sequence viewers:
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1Cannot generate PP/Heatmap alignments for seeds; no PP data available
Key: available, not generated, — not available.
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Curation and family details
This family is new in this Pfam release.
|Seed source:||Anantharaman V|
|Number in seed:||65|
|Number in full:||343|
|Average length of the domain:||102.60 aa|
|Average identity of full alignment:||39 %|
|Average coverage of the sequence by the domain:||24.86 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||1|
|Download:||download the raw HMM for this family|
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