# STOCKHOLM 1.0 #=GF ID HIP1_clath_bdg #=GF AC PF16515.6 #=GF DE Clathrin-binding domain of Huntingtin-interacting protein 1 #=GF AU Coggill P;0000-0001-5731-1588 #=GF GA 28.8 28.8 #=GF NC 28.7 28.7 #=GF TC 28.8 28.9 #=GF SE pdb_2no2 #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Coiled-coil #=GF RN [1] #=GF RM 17257618 #=GF RT Crystal structure at 2.8 A of the DLLRKN-containing coiled-coil #=GF RT domain of huntingtin-interacting protein 1 (HIP1) reveals a #=GF RT surface suitable for clathrin light chain binding. #=GF RA Ybe JA, Mishra S, Helms S, Nix J; #=GF RL J Mol Biol. 2007;367:8-15. #=GF RN [2] #=GF RM 20179344 #=GF RT Accommodation of structural rearrangements in the #=GF RT huntingtin-interacting protein 1 coiled-coil domain. #=GF RA Wilbur JD, Hwang PK, Brodsky FM, Fletterick RJ; #=GF RL Acta Crystallogr D Biol Crystallogr. 2010;66:314-318. #=GF DR INTERPRO; IPR032422; #=GF DR SO; 0001080; coiled_coil; #=GF CC HIP1_clath_bdg is the coiled-coil region of #=GF CC Huntington-interacting proteins 1. It carries a highly conserved #=GF CC HADLLRKN sequence motif at its N-terminus which effects the #=GF CC binding of HIP1R to clathrin light-chain EED regulatory site. #=GF CC this binding then stimulates clathrin lattice assembly. #=GF CC Huntingtin-interacting protein 1 (HIP1) is an obligate binding #=GF CC partner for Huntungtin, and loss of this interaction triggers #=GF CC the cascade of events that results in the apoptosis of neuronal #=GF CC cells and the onset of Hungtinton's disease [1]. Clathrin #=GF CC light-chain binds to a flexible coiled-coil domain in HIP1 and #=GF CC induces a compact state that is refractory to actin binding [2]. #=GF SQ 112 A0A498NYA1.1/455-553 HADLMRK.NAEMVKQVSSTQQAQEELVAYKQQMAV....EMERLKQDNNSTME....AQR.AEIERL..............KQELATERA.EISQVHNALQSKEKAGDQLSS.......VLIGLQAEKEML A0A498NYA1.1/631-684 -------.---------------------------....-----------TMK....AQR.AEIERL..............KQELATERA.EISQVHNALQSKEKAGDQLSS.......VLIGLQAEKEML A0A498NYA1.1/751-841 ------Q.EAEIASLRQAAQLHQTTLQQERDRHQR....EMTALQNQLQ--EK....ELQ.LEMDKL..............RRELEEKRV.ELLRAQSTLNSKETTGDQLSS.......VLVGLQAEKEVL M7BMZ0.1/272-317 HAELLRK.NADTAKQLTVTQQSQEEVALVKEQLAF....QMEQVKRESEMK--....---.------..............---------.---------------------.......------------ M7BMZ0.1/317-409 ------K.NADTAKQLTVTQQSQEEVALVKEQLAF....QMEQVKRESEMKLE....DQT.LQMEQL..............KRELEAKKE.ELTQIQSSLSNSKQAGSELHS.......QVEALHAEKDSL A0A1S3KW91.1/457-555 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HADLLRK.NAEVTKQVTVARQAQGDVEREKKELEH....SFQRVSEQAQRKTQ....EQT.EVLETL..............KRELAASKQ.ELQTVKGTLETSAQSEAERGA.......QLAGLEAERASL F6V0K8.1/420-518 HADLLRK.NAEVTKQVTVARQAQGDVEREKKELEH....SFQRVSEQAQRKTQ....EQT.EVLETL..............KRELAASKQ.ELQTVKGTLETSAQSEAERGA.......QLAGLEAERASL A0A4U5S202.1/432-530 HADLLRK.NAEVTKQVSVARQAQADLEREKKELED....SFQRISDQAQRKTQ....EQT.EVLESL..............KQELATSKQ.ELQIVQGSLESSAQSEAKWTA.......QIAELEKERGSL L9KF35.1/473-571 HADLLRK.NAEVTKQVSVARQAQADLEREKKELED....SFDRVSDQAQRKTQ....EQL.EVLENL..............KQELTASKQ.ELQVLQGSLETSAQSEAKWAT.......EITRLEKERDSL A0A498LXC6.1/267-365 HAELLRK.SADTVKMLSATQQTQEEIERTKQQLAF....EVERVRQESDMKFE....EQR.FDMDRL..............RRELEEKNA.EIQKVKTLLQTSEKAGEQVNS.......SLAALRAEKERL A0A498NW81.1/384-482 HAELLRK.SADTVKMLSATQQTQEEIERTKQQLAF....EVERVRQESDMKFE....EQR.FDMDRL..............RRELEEKNA.EIQKVKTLLQTSEKAGEQVNS.......SLAALRAEKERL A0A226MLH7.1/349-447 HADLLRK.NAEVTKQVTVARQAQGDVEREKKELED....SFQRVSEQSQRKSQ....EQA.EVLETL..............KRELAASKQ.ELQVLQGTLETSMQVGAEQNT.......RIAGLEQERDSL L9KRW2.1/1276-1374 HAELLRK.NADTAKQLTVTQQSQEEVARVKEQLAF....QVEQVKRESEMKLE....EQS.DQLEKL..............RRELETKDG.ELARVQATLSHTEQSGSELSS.......RLDALNAEKEAL A0A0Q3UPU3.1/462-560 HADLLRK.NAEVTKQVTAARQAQGDVEREKKELED....SFQRVXEQAQRKSQ....EQA.EVLDTL..............KRELAASRQ.ELQVLQGTLESSTQVGAEQST.......RIAGLEQERDSL W5ME89.1/467-565 HAELLRK.SADTVKMLSATQQTQEEVARTKQQLTF....EMERIKQEAEMKLE....EQK.FDMEKL..............KRELGERKT.ELLRVQNTLLSNEKAGEKLSG.......TLEGLQAEKEVL R0K221.1/417-515 HADLLRK.NADVTKQVTVARQAQGDVEREKKELED....SFQRVSEQAQRKSQ....EQA.EVLEML..............KQELAASKQ.ELQVLQGTLESSTQVGAEQST.......RIADLEQERDSL F1LML7.1/462-560 HAELLRK.NADTAKQLTVTQQSQEEVARVKEQLAF....QMEQVKRESEMKME....EQS.DQLEKL..............KRELVAKAG.ELAHAQEALSRTEQSGSELSS.......RLDTLNAEKEAL F7E260.1/427-525 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HAGLLRK.NADTAKQLTVSQQNQEEVARIKEELEF....QMDQVKRESDLKLE....DQS.FQTEQL..............KSEIEAKKK.ELLLIQQSLSSTEESKSQLNS.......TLMSLEVEKDTL O75146.2/461-559 HAELLRK.NADTAKQLTVTQQSQEEVARVKEQLAF....QVEQVKRESELKLE....EKS.DQLEKL..............KRELEAKAG.ELARAQEALSHTEQSKSELSS.......RLDTLSAEKDAL H3BEK4.1/432-528 HAELLRK.NADTAKQLTATQQVQEDVARTIETLQF....EVDQGKRESEMKLE....EQT.FLTEQL..............KQELEARKE.ELANVQLSLNSSEQAGSQLKS.......RLQELQDENS-- H3BI26.1/444-542 HADLLRK.NAEVTKQVTVARQAQGDAERLRKELED....NVQRFQEQTQQKTQ....EQT.ETLKSF..............QMELTASRQ.ELETLKASLQTSTQSSTELAS.......KVSSLELEKSSL F6YXY3.2/425-523 HADLLRK.NAEVTKQVTVMRQAQADLQREKKELEE....SFHRASEQAQQKTQ....EQM.EVVENL..............KQELSISKH.EFQVLQGTLETSAQSEAKRNI.......QLEELEKERSSL A0A3B4A6A6.1/475-573 HADLLRK.NAEVTRQMTVARAAQDEVEAVRREMQE....KVKVAQEAADRQEK....AQQ.EQLQEL..............QRELLSSRT.ELESLKSTVTSSQQSSEALNT.......QLAALESEKADL A0A3Q0HIH1.1/363-460 HADLLRK.NAEVTRQVTVARQAQGDMEQEKKELED....SFQRMSEQTQRKSQ....EQT.EVLETL..............KRELAASKQ.ELQSLQSTLESSTRLRGEQST.......RIASLEQEKDS- M7B4M2.1/405-503 HADLLRK.NAEVTKQVTVARQAQGDVEQEKKELED....SFQRMSEQAQRKTQ....EQA.EVLETL..............KRELTASKQ.EQQALQSTLKSSLQSEAERST.......RTAGLEQERDTL A0A1U8DSM8.2/363-460 HADLLRK.NAEVTRQVTVARQAQGDMEQEKKELED....SFQRMSEQTQRKSQ....EQT.EVLETL..............KRELAASKQ.ELQSLQSTLESSTRLRGEQST.......RIASLEQEKDS- A0A2R8QJ16.1/461-559 HADLLRK.NAEVTRQMTVARAAQDEVENVKKEMQD....RLKVAQDSASQQEK....AQL.EQLQAL..............QAELMSSRT.ELETLKSTVTSSQQSNEQLGT.......QLSALVAEKAGL X1WBM9.1/483-581 HADLLRK.NAEVTRQMTVARAAQDEVENVKKEMQD....RLKVAQDSASQQEK....AQL.EQLQAL..............QAELMSSRT.ELETLKSTVTSSQQSNEQLGT.......QLSALVAEKAGL F1R6L2.3/483-581 HADLLRK.NAEVTRQMTVARAAQDEVENVKKEMQD....RLKVAQDSASQQEK....AQL.EQLQAL..............QAELMSSRT.ELETLKSTVTSSQQSNEQLGT.......QLSALVAEKAGL A0A2R8QB02.1/478-576 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