# STOCKHOLM 1.0
#=GF ID Quaking_NLS
#=GF AC PF16551.6
#=GF DE Putative nuclear localisation signal of quaking
#=GF AU Coggill P;0000-0001-5731-1588
#=GF GA 16.7 15.6
#=GF NC 16.6 15.3
#=GF TC 16.7 15.6
#=GF SE Pfam-B_653 (release 27.0)
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF RN [1]
#=GF RM 8589716
#=GF RT The quaking gene product necessary in embryogenesis and
#=GF RT myelination combines features of RNA binding and signal
#=GF RT transduction proteins.
#=GF RA Ebersole TA, Chen Q, Justice MJ, Artzt K;
#=GF RL Nat Genet. 1996;12:260-265.
#=GF RN [2]
#=GF RM 21447554
#=GF RT Fine-tuning of Hh signaling by the RNA-binding protein Quaking
#=GF RT to control muscle  development.
#=GF RA Lobbardi R, Lambert G, Zhao J, Geisler R, Kim HR, Rosa FM;
#=GF RL Development. 2011;138:1783-1794.
#=GF DR INTERPRO; IPR032367;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC Quaking_NLS is the very C-terminal region of quaking proteins
#=GF CC that is purported to be the nuclear localisation signal [1,2].
#=GF SQ 165
H3A0J6.2/315-344     GAMATKIRRHDTRIHPYQRIVTTDR.....ASTGN
A0A287B5I1.1/249-278 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A3Q0DHK7.1/249-278 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
M3XK47.1/256-285     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A2U4CP02.1/257-286 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A2I0MV56.1/265-294 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
U3KNP7.1/269-298     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A2K6ELC6.1/273-302 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A402F649.1/272-301 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A2I0MV54.1/273-302 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A287BE46.1/304-333 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A452GS93.1/303-332 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A1V4JKV9.1/303-332 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A2U4CPA3.1/304-333 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
F7EZ76.2/311-340     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
H0WN63.1/312-341     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
Q5W9D6.1/312-341     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
Q5W9D7.1/312-341     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
Q96PU8.1/312-341     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
Q9GMY1.1/312-341     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
Q9QYS9.1/312-341     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
H2PKU0.1/307-336     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
Q91XU1.2/312-341     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
K7FZW2.1/311-340     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A2U4CNZ8.1/311-340 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A1V4JKZ2.1/311-340 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A493T6X6.1/311-340 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A2U4CNZ5.1/312-341 GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
Q9YH18.2/311-340     GAVATKVRRHDMRVHPYQRIVTADR.....AATGN
A0A3P9A558.1/309-338 GAMATKVRRHDSRVHPYQRIVTTDR.....AATGN
A0A3B4CT71.1/305-334 GAMATKVRRHDSRVHPYQRIVTADR.....AATGN
A0A1S3A5J6.1/397-426 GAVATKVRRHDMRVHPYQRVVTADR.....AATGN
Q6P0D0.2/312-341     GAMATKVRRHDSRVHPYQRIVTADR.....AATGN
A0A2D0RLW9.1/313-342 GAMATKVRRHDSRVHPYQRIVTADR.....AATGN
A0A4W4FCP4.1/313-342 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A3B3S7H8.1/313-342 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A2D0RLW3.1/354-383 GAMATKVRRHDSRVHPYQRIVTADR.....AATGN
A0A3Q3AA85.1/305-334 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A087XFQ4.2/313-342 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
H2MB00.2/313-342     GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A3Q2E3N1.1/313-342 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
H2U0Y4.2/313-342     GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A3Q1CNJ5.1/352-381 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A484C4P7.1/360-389 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A3B4UV45.1/360-389 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A4W6ET59.1/360-389 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A2U9CKZ2.1/363-392 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A3Q3E1G0.1/360-389 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A3Q3RU21.1/360-389 GAMATKVRRHDTRVHPYQRIVTADR.....AATGN
A0A3P8UU83.1/313-342 GAMATKVRRHDARVHPYQRIVTTDR.....AATGN
A0A2D0QPC7.1/308-337 GAVATKVRRHDMRVHPYQRVVTTDR.....ATTGN
A0A2D0QPL4.1/316-345 GAVATKVRRHDMRVHPYQRVVTTDR.....ATTGN
A0A1S3KSX9.1/314-343 GAMATKMRRHDSRVHPYQRIVTADR.....AATGN
A0A1S3KU03.1/306-335 GAMATKMRRHDSRVHPYQRIVTADR.....AATGN
A0A4W5RPI6.1/353-382 GAMATKMRRHDSRVHPYQRIVTADR.....AATGN
A0A1S3KSH7.1/353-382 GAMATKMRRHDSRVHPYQRIVTADR.....AATGN
A0A1S3KSD1.1/345-374 GAMATKMRRHDSRVHPYQRIVTADR.....AATGN
A0A2Y9D6R7.1/249-278 GAVAAKVRRHDMRVHPYQRVVTADR.....AATGN
A0A4W5PGI5.1/308-337 GAVTTKVRRHELRVHPYQRIVTADR.....AATGN
A0A2Y9D6R4.1/257-286 GAVAAKVRRHDMRVHPYQRVVTADR.....AATGN
A0A4W5P3W2.1/308-337 GAVTTKVRRHELRVHPYQRIVTADR.....AATGN
A0A1S3N2M4.1/308-337 GAVTTKVRRHELRVHPYQRIVTADR.....AATGN
A0A4U5VME4.1/297-325 GAMTTKVRRHDKRIHPYQRVVTPDR.....AATA-
A0A3B5K6W8.1/310-338 GAMTTKVRRHDKRIHPYQRVVTPDR.....AATA-
G3NFU1.1/310-338     GAMTTKVRRHDKRIHPYQRVVTPDR.....-ETNG
A0A3Q3NMZ6.1/309-337 GAMTTKVRRHDKRIHPYQRVVTPDR.....AATA-
A0A3B5JWT2.1/318-346 GAMTTKVRRHDKRIHPYQRVVTPDR.....AATA-
A0A3Q3NMY9.1/317-345 GAMTTKVRRHDKRIHPYQRVVTPDR.....AATA-
A0A3Q1BBZ8.1/287-315 GAMTTKVRRHDKRIHPYQRVVTTDR.....AATA-
G3NFU4.1/349-377     GAMTTKVRRHDKRIHPYQRVVTPDR.....-ETNG
A0A3Q1D577.1/295-323 GAMTTKVRRHDKRIHPYQRVVTTDR.....AATA-
G1SL40.1/311-339     GAVATKVRRHDMRVHPYQRIVTADR.....AVTG-
A0A3Q3A6F7.1/309-337 GAMTTKVRRHDKRIHPYQRVVTTDR.....AATA-
A0A3Q3KT27.1/310-338 GAMTTKVRRHDKRIHPYQRVVTTDR.....AATA-
A0A3Q2CZT4.1/310-338 GAMTTKVRRHDKRIHPYQRVVTTDR.....AATA-
A0A3B3HNA8.1/310-338 GAMTTKVRRHDKRIHPYQRVVTTDR.....AATA-
A0A4W6DYC5.1/317-345 GAMTTKVRRHDKRIHPYQRVVTTDR.....AATA-
I3JMJ5.1/318-346     GAMTTKVRRHDKRIHPYQRVVTTDR.....AATA-
A0A3Q2CZK1.1/318-346 GAMTTKVRRHDKRIHPYQRVVTTDR.....AATA-
A0A3B3HVC7.1/318-346 GAMTTKVRRHDKRIHPYQRVVTTDR.....AATA-
A0A087Y7W8.2/318-346 GAMTTKVRRHDKRIHPYQRVVTTDR.....AATA-
A0A3B3SHB2.1/315-344 GAVATKVRRHEVRVHPYQRVVTSDR.....AATGN
G1KBR3.1/311-340     GAVATKVRRHDMRVHPYQRIVTADR.....GNTDN
A0A1S3SMN0.1/314-343 GAMATKVRRHDSRVRPYQRIVTADR.....AATGN
A0A1S3SMM2.1/306-335 GAMATKVRRHDSRVRPYQRIVTADR.....AATGN
A0A4W5KGR3.1/350-379 GAMATKVRRHDSRVRPYQRIVTADR.....AATGN
A0A1S3SML7.1/352-381 GAMATKVRRHDSRVRPYQRIVTADR.....AATGN
A0A1S3SMM3.1/344-373 GAMATKVRRHDSRVRPYQRIVTADR.....AATGN
A0A4W3GYL3.1/311-336 GAVATKVRRHDMRVHPYQRIVTADR.....E----
A0A0G2JXZ5.1/311-340 GAVATKVRRHDMRVHPYQRIVTADR.....VNLGN
A0A226N5I8.1/256-280 GAVATKVRRHDMRVHPYQRIVTADR.....-----
G3US15.1/264-288     GAVATKVRRHDMRVHPYQRIVTADR.....-----
G3USM7.1/273-298     GAVATKVRRHDMRVHPYQRIVTADR.....G----
I3JMJ6.1/310-339     GAMTTKVRRHDKRIHPYQRVVTTDR.....VKAGN
U3KCH2.1/273-297     GAVATKVRRHDMRVHPYQRIVTADR.....-----
H3DIQ3.1/312-345     GAMATKVRRHDTRVHPYQRIVTADRvsnhlAATG-
G3UBL1.1/277-301     GAVATKVRRHDMRVHPYQRIVTADR.....-----
G1TKD8.1/290-316     --VTTKVQKHAMCLHPYQR-VTTDR.....AATCN
F6ZPD6.1/313-338     GAVATKVRRHDMRVHPYQRIVTADR.....D----
I3JBV9.1/360-393     GAMATKVRRHDTRVHPYQRIVTADRvsnhlAATG-
W5MAX1.1/372-405     GAMATKVRRHDTRVHPYQRIVTADRvsnhlAATG-
A0A4W4EI20.1/312-341 GAVTTKVRRQDMRVHPYQRVVTAER.....AATGN
A0A2D0S9D2.1/309-338 GAVTTKVRRQDMRVHPYQRVVTAER.....AATGN
A0A2D0S9D0.1/310-339 GAVTTKVRRQDMRVHPYQRVVTAER.....AATGN
A0A2D0SA66.1/311-340 GAVTTKVRRQDMRVHPYQRVVTAER.....AATGN
A0A2D0SAS3.1/316-345 GAVTTKVRRQDMRVHPYQRVVTAER.....AATGN
A0A2D0S9C8.1/317-346 GAVTTKVRRQDMRVHPYQRVVTAER.....AATGN
H3D0J8.1/310-337     GAMTTKVRRHDKRIHPYQRVVTPDR.....VKT--
U3IRE6.2/311-335     GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A3B3S9M1.1/313-338 GAMATKVRRHDTRVHPYQRIVTADR.....G----
G3P583.1/358-383     GAMATKVRRHDTRVHPYQRIVTADR.....A----
A0A3P8YE34.1/309-333 GAMATKVRRHDSRVHPYQRIVTTDR.....-----
A0A4W3JLG2.1/313-337 GAMATKVRRHDSRVHPYQRIVTADR.....-----
A0A3P8XCG8.1/315-343 GAMTAKVQRHNMRVHPYQRVVTTDR.....AATA-
G1NYR8.1/273-297     GAVATKVRRHDMRVHPYQRIVTADR.....-----
H3A0J7.1/358-382     GAMATKIRRHDTRIHPYQRIVTTDR.....-----
A0A091CXA5.1/249-273 GAVATKVRRHDMRVHPYQRIVTADR.....-----
R0JJQ9.1/264-288     GAVATKVRRHDMRVHPYQRIVTADR.....-----
H0V0U4.2/277-301     GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A1S3RZF5.1/309-336 -AV-TKVRRHELRVHPYQRIVTADR.....AATGN
W5NID5.1/363-387     GAVATKVRRHDMRVHPYQRVVTADR.....-----
A0A0Q3QWN2.1/287-311 GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A087R0D4.1/208-232 GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A093H2S0.1/208-232 GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A4W3J9K1.1/330-354 GAMATKVRRHDSRVHPYQRIVTADR.....-----
A0A3M0KHN6.1/433-457 GAVATKVRRHDMRVHPYQRIVTADR.....-----
L5KGT1.1/262-286     GAVATKVRRHDMRVHPYQRVVTADR.....-----
A0A2D0RNH4.1/313-337 GAMATKVRRHDSRVHPYQRIVTADR.....-----
H2MB02.2/313-337     GAMATKVRRHDTRVHPYQRIVTADR.....-----
A0A091E9Y3.1/256-280 GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A091HP72.1/256-280 GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A093Q245.1/256-280 GAVATKVRRHDMRVHPYQRIVTADR.....-----
G1NIA9.2/264-288     GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A4U5VEV2.1/359-383 GAMATKVRRHDTRVHPYQRIVTADR.....-----
A0A498MKM2.1/354-378 GAMATKVRRHDSRVHPYQRIVTTDR.....-----
G5B6X9.1/277-301     GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A4W4FEU7.1/354-378 GAMATKVRRHDTRVHPYQRIVTADR.....-----
A0A091GI84.1/296-320 GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A093IHE5.1/303-327 GAVATKVRRHDMRVHPYQRIVTADR.....-----
H0ZGF8.1/311-335     GAVATKVRRHDMRVHPYQRIVTADR.....-----
F1LMH5.3/311-335     GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A099YS66.1/303-327 GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A0P7Y9V4.1/155-179 GAMATKVRRHDTRVHPYQRIVTADR.....-----
A0A3Q0HED3.1/273-297 GAVATKVRRHDMRVHPYQRIVTADR.....-----
A0A401NSC1.1/312-336 GAMATKVRRHDSRVHPYQRVVTADR.....-----
A0A401S951.1/319-343 GAMATKVRRHDSRVHPYQRVVTADR.....-----
A0A4W4FQ74.1/304-328 GAVTTKVRRHEMRVHPYQRVVTTDR.....-----
A0A0P7V9L2.1/120-144 GAVTTKVRRHEMRVHPYQRVVTADR.....-----
A0A1S3Q4Q2.1/316-344 GAMTAKVQRHNMRVHPYQRVVNTDR.....AATA-
A0A1S3FVG6.1/257-281 GAVATKVRRHDVRVHPYQRIVTADR.....-----
A0A060WZF3.1/138-165 GAMATKMRRHDSRVHPYQRIV--DR.....AATGN
A0A2Y9QY79.1/249-273 GAVAAKVRRHDMRVHPYQRVVTADR.....-----
A0A2Y9QQR5.1/256-280 GAVAAKVRRHDMRVHPYQRVVTADR.....-----
A0A2Y9QSF5.1/257-281 GAVAAKVRRHDMRVHPYQRVVTADR.....-----
G3WL36.1/208-237     GMVAAKVRRHDVRVHPYQRIVTANQ.....AATGN
A0A3B3SI51.1/314-338 GAVATKVRRHEVRVHPYQRVVTSDR.....-----
A0A1S3SML6.1/352-376 GAMATKVRRHDSRVRPYQRIVTADR.....-----
A0A060VY96.1/352-376 GAMATKVRRHDSRVRPYQRIVTADR.....-----
A0A4W5NAS0.1/316-340 GAMTAKVQRHNMRVHPYQRVVNTDR.....-----
A0A3P9A8W1.1/308-332 GAVTGKVRRHELRVHPYQRIVTADR.....-----
A0A0P7WQM2.1/313-337 GAVAAKVRRHDVRVHPYQRVVTADR.....-----
A0A1S3NDU9.1/318-346 GAMTAQVQRHNMRAHPYQRVVNTDR.....AATA-
A0A1S3NE03.1/318-342 GAMTAQVQRHNMRAHPYQRVVNTDR.....-----
C3XVZ1.1/266-284     -AV-TKARRHVVRDHPYQRAV----.....-----
A0A3Q0R517.1/253-274 GVVAAKIRRHELHVRPYRRMLI---.....-----
//