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4  structures 2390  species 0  interactions 2402  sequences 4  architectures

Family: RsgA_N (PF16745)

Summary: RsgA N-terminal domain

Pfam includes annotations and additional family information from a range of different sources. These sources can be accessed via the tabs below.

The Pfam group coordinates the annotation of Pfam families in Wikipedia, but we have not yet assigned a Wikipedia article to this family. If you think that a particular Wikipedia article provides good annotation, please let us know.

This tab holds the annotation information that is stored in the Pfam database. As we move to using Wikipedia as our main source of annotation, the contents of this tab will be gradually replaced by the Wikipedia tab.

RsgA N-terminal domain Provide feedback

This domain is found at the N-terminus of RsgA domains. It has an OB fold [1].

Literature references

  1. Levdikov VM, Blagova EV, Brannigan JA, Cladiere L, Antson AA, Isupov MN, Seror SJ, Wilkinson AJ;, J Mol Biol. 2004;340:767-782.: The crystal structure of YloQ, a circularly permuted GTPase essential for Bacillus subtilis viability. PUBMED:15223319 EPMC:15223319


Internal database links

This tab holds annotation information from the InterPro database.

InterPro entry IPR031944

This domain has an OB fold and is found at the N terminus of bacterial circularly permutated GTPase RsgA/YloQ [PUBMED:15223319]. RsgA is a late-stage ribosome biogenesis factor involved in the 30S subunit maturation [PUBMED:21788480].

Domain organisation

Below is a listing of the unique domain organisations or architectures in which this domain is found. More...

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Alignments

We store a range of different sequence alignments for families. As well as the seed alignment from which the family is built, we provide the full alignment, generated by searching the sequence database (reference proteomes) using the family HMM. We also generate alignments using four representative proteomes (RP) sets, the UniProtKB sequence database, the NCBI sequence database, and our metagenomics sequence database. More...

View options

We make a range of alignments for each Pfam-A family. You can see a description of each above. You can view these alignments in various ways but please note that some types of alignment are never generated while others may not be available for all families, most commonly because the alignments are too large to handle.

  Seed
(66)
Full
(2402)
Representative proteomes UniProt
(6551)
NCBI
(8075)
Meta
(191)
RP15
(540)
RP35
(1395)
RP55
(1964)
RP75
(2681)
Jalview View  View  View  View  View  View  View  View  View 
HTML View  View               
PP/heatmap 1 View               

1Cannot generate PP/Heatmap alignments for seeds; no PP data available

Key: ✓ available, x not generated, not available.

Format an alignment

  Seed
(66)
Full
(2402)
Representative proteomes UniProt
(6551)
NCBI
(8075)
Meta
(191)
RP15
(540)
RP35
(1395)
RP55
(1964)
RP75
(2681)
Alignment: