# STOCKHOLM 1.0
#=GF ID AvrPtoB_bdg
#=GF AC PF16847.6
#=GF DE Avirulence AvrPtoB, BAK1-binding domain
#=GF AU Coggill P;0000-0001-5731-1588
#=GF GA 27.0 27.0
#=GF NC 26.9 23.2
#=GF TC 27.0 28.7
#=GF SE pdb_3tl8
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF RN [1]
#=GF RM 22169508
#=GF RT Structural analysis of Pseudomonas syringae AvrPtoB bound to
#=GF RT host BAK1 reveals two similar kinase-interacting domains in a
#=GF RT type III Effector.
#=GF RA Cheng W, Munkvold KR, Gao H, Mathieu J, Schwizer S, Wang S, Yan
#=GF RA YB, Wang J, Martin GB, Chai J;
#=GF RL Cell Host Microbe. 2011;10:616-626.
#=GF DR INTERPRO; IPR031759;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC AvrPtoB_bdg is a binding region on a family of bacterial plant
#=GF CC pathogenic proteins. Type III effector proteins are injected
#=GF CC into plants by bacteria when they are under attack, eg
#=GF CC Pseudomonas syringae when attacking tomato. AvrPtoB is one such
#=GF CC effector that suppresses the plants' PAMP-triggered innate
#=GF CC immunity.  PAMPs are pathogen/microbe-associated molecular
#=GF CC patterns that are detected as non-self by a host.  AvrPtoB
#=GF CC suppresses this response by binding to BAK1, a kinase that acts
#=GF CC with several pattern recognition receptors to activate defence
#=GF CC signalling. AvrPtoB_bdg is the region of AvrPtoB that binds to
#=GF CC BAK1 thereby preventing its kinase activity after the perception
#=GF CC of flagellin [1].
#=GF SQ 24
Q8RSY1.1/266-356     PIRVDRAAMRNRGND..EADAALRG.LVQQGVNLEHLRTALERHVMQRLPIPLDIGSALQNVGINPSIDLG.ESLVQHPLLNLNVALNRMLGLRP
A0A3M5TWK6.1/315-405 PIRVDRAAMRNRGND..EADAALRG.LVRQGVNLEHLRTALERHVMQRLPIPRDIGSALQNVGINPSIDSG.DTLVQHPLLNLNLALNRMQGLRP
A0A0P9TCT9.1/244-334 PIRPDRAAMRNRGNN..QAAAALQG.LVQQGVNLEDLRTALERHLLRHQPIPLDIAYALQSVGIPPSVDTA.ESLVESPLMDLSVALHRVLGPRP
A0A0P9W8M4.1/244-334 PIRPDRAAMRNRGNN..QAAAALQG.LVQQGVNLEDLRTALERHLLRHQPIPLDIAYALQSVGIPPSVDTA.ESLVESPLMDLSVALHRVLGPRP
A0A0M9GXI3.1/258-348 PIRPDRAAMRNRGNN..QAAAALQG.LVQQGVNLEDLRTALERHLLRHQPIPLDIAYALQSVGIPPSVDTA.ESLVESPLMDLSIALHRVLGPRP
A0A0Q0FB30.1/14-100  PIRVDRVVMRNRGNN..DADAALQQ.LTQQGVGMEDLRAALEIHIMRRRPLPNDIARALQSVGINPSVDFG.ESLVEHPLLNLSAALGRRL----
S6T863.1/175-262     ---ANRVAMRNRGNN..QADAALQG.LAQQGVDMEDLRAALERHILHRRPIPMDIAYVLQGVGIAPSIDTG.ESLMENPLMNLSVALHRALGSRP
F3F3B2.1/1-83        --------MRNRGNN..QAAAALQG.LVQQGVNLEDLRTALERHLLRHQPIPLDIAYALQSVGIPPSVDTA.ESLVESPLMDLSVALHRVLGPRP
A0A0P9V1P2.1/1-83    --------MRNRGNN..QAAAALQG.LVQQGVNLEDLRTALERHLLRHQPIPLDIAYALQSVGIPPSVDTA.ESLVESPLMDLSVALHRVLGPRP
A0A0Q0CM26.1/151-240 PTRPDRAAMRNRGNN..EADTALQE.LARQGINMERLSAVLGRHLMGRRPIPPDMARALQSVGISPSIDSA.ESLMENPLLNLNIALSRMLGPR-
A0A3M3Z4Z6.1/297-387 PTRPDRVAMRNRGNI..DADAALRD.LAQQGVDMGRLHAALGAHIMHGRALPEDLRRALGGVGIRPYNETS.LSLMEHPLLNLNIALNRMLGPRP
A0A0N0FC18.1/215-305 PTRPDRVAMRNRGNI..DADVALRD.LAQQGVNMGRLHAALGAHIMHGRALPEDLRRALGGVGIRPYNETS.LSLMEHPLLNLNIALNRRLGPRP
A0A0N0FGF6.1/299-383 ---ANRVAMRNRGNN..EADAALQA.LAQNGINMEDLRAALEAYIVWLRPIPLDIANALEGVGITPRFDNPeEAKVDNPLMNLSSALKRRL----
A0A1X0NCN9.1/1-83    --------MRNRGNS..DADAALRH.LDQQGVNMGRLHTALGAHIMHGRALPEDLRRALRSAGIRPYNETS.LSLMDHPLLNLNIALNRRLGPRP
A0A120AS83.1/230-317 --RLASAARHNHSAN..QTNEALRR.LTQEGVDMERLRTSLGRYIMSLEPLPPDLRRALESVGINPFIPEE.LSLVDHPVLNFSAALNRMLASR-
A0A0P9QEX3.1/232-319 --RLASAARHNHSAN..QTNEALRR.LTQEGVDMERLRTSLGRYIMSLEPLPPDLRRALESVGINPFIPEE.LSLVDHPVLNFSAALNRMLASR-
Q48B61.1/228-315     --RLASAARHNHSAN..QTNEALRR.LTQEGVDMERLRTSLGRYIMSLEPLPPDLRRALESVGINPFIPEE.LSLVDHPVLNFSAALNRMLASR-
A0A0P9L850.1/161-248 --RLASAARHNHSAN..QTNEALRR.LTQEGVDMERLRTSLGRYIMSLEPLPPDLRRALESVGINPFIPEE.LSLVDHPVLNFSAALNRMLASR-
A0A0P9WS49.1/232-319 --RLASAARHNHSAN..QTNEALRR.LTQEGVDMERLRTSLGRYIMSLEPLPPDLRRALESVGINPFIPEE.LSLVDHPVLNFSAALNRMLASR-
A0A0P9KJW6.1/228-315 --RLASAARHNHSAN..QTNEALRR.LTQEGVDMERLRTFLGRYIMSLEPLPPDLRRALESVGINPFIPEE.LSLVDHPVLNFSAALNRMLASR-
Q4ZMD6.1/239-328     --RLADAERRNRSANqtDTDEALRR.LTQAGVDMERLSTSLGRYIHSFQPAPPDLRRLLESVGIDPDIPEE.LTLVNNPVLNLNVALNRMLASR-
F3F4A1.1/1-60        ---------------..--------.-------MERLRTSLGRYIMSLEPLPPDLRRALESVGINPFIPEE.LSLVDHPVLNFSAALNRMLASR-
E7PH19.1/1-60        ---------------..--------.-------MERLRTSLGRYIMSLEPLPPDLRRALESVGINPFMPED.LGLVDHPVLNFSAALNRMLASR-
A0A3D8JU15.1/287-361 -----------RANE..RPSGELLGrLADSGISTRRLHRALRSYLVDLLPLPPDILSALNRAGIETHIPEH.IAIVSHPLFDLNRELNA------
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