Summary: Poly(hydroxyalcanoate) granule associated protein (phasin)
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Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon .
Matsumoto K, Matsusaki H, Taguchi K, Seki M, Doi Y; , Biomacromolecules 2002;3:787-792.: Isolation and characterization of polyhydroxyalkanoates inclusions and their associated proteins in Pseudomonas sp. 61-3. PUBMED:12099824 EPMC:12099824
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR008769
Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
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Curation and family details
|Seed source:||Pfam-B_8339 (release 8.0)|
|Number in seed:||31|
|Number in full:||264|
|Average length of the domain:||129.00 aa|
|Average identity of full alignment:||33 %|
|Average coverage of the sequence by the domain:||71.12 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||6|
|Download:||download the raw HMM for this family|
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