Summary: Rhamnogalacturonate lyase family
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Rhamnogalacturonate lyase ( EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin . This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
This tab holds annotation information from the InterPro database.
InterPro entry IPR010325
Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin [PUBMED:12591882]. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
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This clan is composed of a beta-sandwich that was first observed in domain 5 of beta-galactosidase, then as the central domain of copper amine oxidase, the C-terminal domain of chondroitinase, the C-terminal domain of hyaluronate lyase, the N-terminal domain of maltose phosphorylase and in Galactose Mutarotase . All these enzymes act on a sugar substrate.
The clan contains the following 17 members:Aldose_epim Bgal_small_N DUF1926 DUF4432 DUF5054 DUF5107 Gal_mutarotas_2 Glucodextran_N Glyco_hyd_65N_2 Glyco_hydro_38C Glyco_hydro_65N Glyco_transf_36 Lyase_8 MdoG Rhamnogal_lyase RhgB_N YidC_periplas
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Curation and family details
|Seed source:||Pfam-B_8355 (release 9.0)|
|Number in seed:||4|
|Number in full:||252|
|Average length of the domain:||170.00 aa|
|Average identity of full alignment:||46 %|
|Average coverage of the sequence by the domain:||30.98 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||8|
|Download:||download the raw HMM for this family|
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