Summary: Sad1 / UNC-like C-terminal
This is the Wikipedia entry entitled "SUN domain". More...
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SUN domain Edit Wikipedia article
SUN (Sad1p, UNC-84) domains are conserved C-terminal protein regions a few hundred amino acids long. SUN domains are usually found following a transmembrane domain and a less conserved region of amino acids. Most proteins containing SUN domains are thought to be involved in the positioning of the nucleus in the cell. It is thought that SUN domains interact directly with KASH domains in the space between the outer and inner nuclear membranes to bridge the nuclear envelope and transfer force from the nucleoskeleton to the cytoplasmic cytoskeleton. SUN proteins are thought to localize to the inner nuclear membrane. The S. pombe Sad1 protein localises at the spindle pole body. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2. The SUN domain of Sun2 has been demonstrated to be in the periplasm.
Examples of SUN Proteins
- SUN1, 2, and 3
- SUN1, 2, 3, 4, and 5
- SUN1, and 2
- Tzur YB, Wilson KL, Gruenbaum Y (Oct 2006). "SUN-domain proteins: 'Velcro' that links the nucleoskeleton to the cytoskeleton". Nat Rev Mol Cell Biol. 7 (10): 782–8. doi:10.1038/nrm2003. PMID 16926857.
- Hodzic DM, Yeater DB, Bengtsson L, Otto H, Stahl PD (June 2004). "Sun2 is a novel mammalian inner nuclear membrane protein". J. Biol. Chem. 279 (24): 25805–12. doi:10.1074/jbc.M313157200. PMID 15082709.
- Raff JW (September 1999). "The missing (L) UNC?". Curr. Biol. 9 (18): R708–10. doi:10.1016/S0960-9822(99)80446-1. PMID 10508607.
Sad1 / UNC-like C-terminal Provide feedback
The C. elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and and Sad1 share a common C-terminal region, that is often termed the SUN (Sad1 and UNC) domain [1-2]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 . The SUN domain of Sun2 has been demonstrated to be in the periplasm .
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR012919
The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [PUBMED:10508607, PUBMED:15082709]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 [PUBMED:10508607]. The SUN domain of Sun2 has been demonstrated to be in the periplasm [PUBMED:15082709].
- the number of sequences which exhibit this architecture
a textual description of the architecture, e.g. Gla, EGF x 2, Trypsin.
This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
- the UniProt description of the protein sequence
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This large superfamily contains beta sandwich domains with a jelly roll topology. Many of these families are involved in carbohydrate recognition. Despite sharing little sequence similarity they do share a weak sequence motif, with a conserved bulge in the C-terminal beta sheet. The probable role of this bulge is in bending of the beta sheet that contains the bulge. This enables the curvature of the sheet forming the sugar binding site .
The clan contains the following 27 members:Allantoicase APC10 Bac_rhamnosid_N BetaGal_dom4_5 CBM_11 CBM_15 CBM_17_28 CBM_4_9 CBM_6 CIA30 Cleaved_Adhesin DUF642 Endotoxin_C Ephrin_lbd F5_F8_type_C FBA Glyco_hydro_2_N Laminin_N Lyase_N MAM Muskelin_N P_proprotein PA-IL PepX_C PITH Sad1_UNC XRCC1_N
We make a range of alignments for each Pfam-A family:
- the curated alignment from which the HMM for the family is built
- the alignment generated by searching the sequence database using the HMM
- Representative Proteomes (RPs) at 15%, 35%, 55% and 75% co-membership thresholds
- alignment generated by searching the NCBI sequence database using the family HMM
- alignment generated by searching the metagenomics sequence database using the family HMM
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1Cannot generate PP/Heatmap alignments for seeds; no PP data available
Key: available, not generated, — not available.
Format an alignment
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Curation and family details
|Seed source:||Pfam-B_5052 (release 14.0)|
|Author:||Wood V, Finn RD|
|Number in seed:||25|
|Number in full:||1140|
|Average length of the domain:||126.30 aa|
|Average identity of full alignment:||24 %|
|Average coverage of the sequence by the domain:||15.87 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||8|
|Download:||download the raw HMM for this family|
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How the sunburst is generated
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For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the Sad1_UNC domain has been found. There are 4 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.
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